Luidia clathrata (European starfish): 117287954
Help
Entry
117287954 CDS
T10152
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
arun Luidia clathrata (European starfish)
Pathway
arun04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
arun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117287954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
117287954
NCBI-ProteinID:
XP_033624506
LinkDB
All DBs
Position
3:14955306..15002669
Genome browser
AA seq
1418 aa
AA seq
DB search
MYSFVGLSTRYRRLLLVIAVLFTIAEAQSANKIFGAKGDRGPKGEPGEAFGGGGSGFVPR
AGPPGNPGPPGPSGSRGEIGDSGPSGPYGQKGNAGSRGLNGLPGQPGRAGPPGPPGTIAQ
SANIGQQSYKGVLPGAYQYPQASVQGPPGPRGLPGSAGNRGAQGLMGPAGPTGEPGPSGP
SGPAGPPGPQGRGGDDGDDGKDGAQGPSGPPGSTGPRGTPGRPGSSGMKGHAGFPGLPGM
KGETGNKGDRGSDGATGPSGAPGLPGAQGSQGERGRNGAQGEAGPAGSDGSPGSQGPSGP
PGPSGAPGMPGPSGAKGDAGSQGGRGPQGLQGVRGERGSDGSSGAPGAPGAAGRDGSVGS
KGATGAPGPMGAPGFQGATGAPGLPGAVGASGAKGDQGAPGPSGERGENGPPGPTGESGP
QGSPGESGQDGARGSRGSPGPTGPIGAPGERGSIGPIGAPGPAGPQGAKGNTGERGARGE
QGQKGSEGEPGRAGEPGIPGSRGLTGAPGKEGRDGKPGPAGPSGDDGRPGNQGAQGARGL
PGMQGLPGAPGATGDRGADGAPGPSGAQGAAGEAGKQGNAGPPGPSGSPGSQGERGPSGP
QGAGGPMGPPGPSGPVGEVGPAGDVGPPGESGPSGPMGPRGERGSGGERGPAGPSGLPGK
RGTAGRSGSDGNKGEPGQKGDAGIQGPSGPQGAPGERGPAGPSGPAGPVGSVGPSGAPGP
SGSDGATGPIGPIGPSGAIGMPGAPGDAGEPGPSGATGPRGDTGEQGASGPPGPQGFAGA
TGRPGIQGQRGENGPSGDRGESGPAGPTGAPGDAGAPGPAGAVGAPGDRGESGPQGSQGP
SGPMGPVGAPGLAGPTGPAGPSGPSGNDGPPGARGESGSPGRSGDQGVQGLPGPSGEKGD
RGDDGDVGSAGPPGPPGPAGQIGNLGINGPPGPRGGSGPAGINGEAGRSGNDGAPGERGA
PGAPGPAGIAGPSGDAGPEGENGRDGAPGPSGARGDKGDQGPGGPTGPPGAHGLAGAPGP
SGPAGERGDSGSSGPAGPAGPSGARGNTGPSGPAGPSGPAGERGSNGAQGAKGHPGQPGL
PGIQGPPGVAGEIGSPGESGAAGQRGPPGQRGNNGKDGVAGPRGFDGQDGPRGPRGSDGP
SGPAGPAGPPGPPGPPGEVQASYGLSYPYAASAGKGSSDPYGSYGGYYGDKPVKGKPMDN
TEIRSALASLDKQINSIRSPDGTKGNPARTCKDLFMCNPTFPTGHYYIDPNQGCTLDAFK
AQCIKETDETCIEAKDVEYKTVFSGTSKSVYLSTLNDGKVIEYNITDASQLTFLRLLTTN
VSQTITYNCKNSIALGDAKRSLKLLTSSDVELTNEEGKNQYDVISDECTVRDGEWHKTRV
GYESTTRSSRLPIIDVAAGDIGGVLQEFTWEIEPVCFV
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgtatagctttgtaggtctatccacccgttacaggcggttactcctggtcatagctgtt
ctgttcaccatagccgaggcccaatctgccaataaaatttttggcgccaagggtgaccga
ggaccaaaaggagagcctggagaggccttcggaggcggtggcagcgggtttgtaccaaga
gctgggccaccaggaaacccaggacccccaggaccatctggatctcgtggtgagattggt
gattcaggaccatccggaccctatggacagaagggaaatgctggatctcgtggattgaat
ggacttcccggtcaacctggacgcgctggaccaccaggacccccaggaaccattgcccag
agtgccaacattggacaacaatcttacaagggagtcctcccaggagcctaccagtaccca
caagcctccgttcaaggacccccaggaccacgtggtcttccaggtagcgcaggaaaccga
ggagcacaaggtttgatgggacctgctggacctactggtgagcccggaccctctggacca
tctggacccgctggacccccaggacctcagggacgtggtggtgatgatggtgacgatggc
aaagatggagcccaaggaccctctggaccaccaggaagcactggaccaagaggtacccca
ggcagaccaggatcaagtggcatgaagggacatgctggattcccaggacttccaggaatg
aagggagagacaggaaacaagggagaccgtggatctgatggtgcaactggcccctctggt
gcccctggtcttccaggagcccaaggttcacagggagagagaggacgtaatggagcccaa
ggagaggctggcccagctggttctgatggttccccaggatcccaaggaccttctggccca
ccaggaccatccggtgccccaggaatgccaggaccatcaggagcaaagggagatgctggt
tcccagggaggacgtggaccacagggtcttcagggtgtacgtggtgagcgtggatcagat
ggttcttcaggagccccaggagcacccggtgcagcaggacgtgatggcagcgttggatcc
aagggagcaactggtgccccaggacccatgggcgcacccggattccaaggagctactgga
gccccaggacttccaggagcagttggagcatctggagctaagggagaccaaggagcacct
ggaccaagtggtgagcgtggagagaatggaccaccaggacccaccggtgagagtggacca
caaggaagcccaggagagtctggacaagatggagccagaggttcccgtggatcccctgga
ccaactggaccaattggtgcccctggcgagcgtggatcaatcggaccaattggagcccca
ggacctgctggaccacagggagctaagggaaacactggagagcgtggagccagaggagag
caaggacagaagggatccgagggagagccaggacgtgcaggagagccaggaataccagga
tcacgtggattgaccggagccccaggcaaagagggacgtgatggaaagccaggaccagct
ggaccatctggtgatgacggtcgcccaggtaaccaaggagctcagggagctcgtggactc
ccaggaatgcaaggactaccaggagccccaggagcaactggtgaccgaggagctgatggt
gccccaggaccatccggtgctcagggagctgcaggtgaggctggaaaacaaggaaatgct
ggacccccaggaccctctggaagcccaggatctcaaggagagcgtggaccatctggaccc
cagggagccggtggaccaatgggacccccaggaccaagcggacccgttggtgaggttgga
cctgctggagatgttggaccacctggtgaatctggaccctctggaccaatgggaccacgt
ggcgagcgtggatctggtggtgagcgtggacccgctggaccctcaggtcttccaggaaag
cgtggaacagctggacgcagtggatctgatggaaacaagggagagccaggacagaaggga
gatgctggaattcagggaccatctggcccacagggagccccaggtgagcgtggacccgct
ggaccatcaggacctgctggaccagttggatctgttggaccatctggagccccaggacca
tctggatctgatggcgctactggacccattggacctattggaccatctggagctattggc
atgccaggagccccaggagatgccggagaaccaggaccatcaggtgctactggaccacga
ggagacactggagagcaaggagcatctggacccccaggaccacaaggtttcgctggcgcc
actggccgcccaggaatccagggacaacgcggagagaatggaccatctggagatagagga
gagtctggaccagctggaccaactggagccccaggtgatgccggagccccaggacccgct
ggagcagttggcgccccaggagaccgtggagagtctggaccacagggatctcaaggacca
tctggacccatgggaccagttggagcaccaggacttgctggaccaactggaccagccgga
ccctctggcccatctggaaatgacggaccaccaggagcccgcggagaatctggttcccca
ggccgctctggagaccaaggagttcagggacttcccggaccatctggagagaagggagac
cgtggagatgatggtgatgttggatctgctggacccccaggaccaccaggacctgctgga
caaatcggaaaccttggaatcaacggaccaccaggaccacgtggaggctccggcccagct
ggtatcaatggagaggctggacgctcaggaaatgatggagcaccaggagagcgtggagct
ccaggagcaccaggacctgctggcattgctggaccatctggagatgctggaccagagggt
gagaatggacgtgacggtgccccaggaccaagcggagctcgcggagataagggagaccaa
ggaccaggaggaccaactggaccaccaggagcccatggccttgctggagccccaggacca
tctggacccgctggtgagcgtggagactctggctcatctggacctgctggacccgctgga
ccctctggagcacgtggaaacactggaccttctggacccgctggcccatctggacctgct
ggtgagcgtggatctaatggagcacaaggagctaagggacacccaggacagccaggcctt
cccggaatccagggaccacctggagttgctggagagattggatcccctggtgaatctggt
gctgctggacaaagaggacccccaggacagcgtggaaacaatggaaaggatggtgttgct
ggaccccgtggatttgatggacaagatggaccccgtggaccacgtggatctgatggacca
tctggacccgctggacctgctggacccccaggacccccaggacccccaggagaggtgcaa
gctagctacggactctcatacccatacgccgccagcgcaggaaagggatcaagcgaccca
tacggtagctatggtggatattacggagacaagccagtcaagggcaagcccatggataac
accgagatcaggagcgcacttgcctcactcgacaaacagatcaacagcatccgctcacct
gacggcaccaagggcaacccagcacgtacctgcaaggatctcttcatgtgcaacccaact
ttcccaactggacactactacatcgaccccaaccagggatgcactcttgatgccttcaag
gcccaatgtatcaaggagaccgacgagacttgcattgaggctaaggatgttgagtacaag
actgtcttcagtggtacatctaagagcgtctacttgagcaccctcaatgacggcaaagtt
atcgagtacaacatcaccgatgcttcccagcttaccttcctccgcctcctgaccaccaac
gtctcacagaccatcacctacaactgcaagaactccatcgccctcggtgatgccaagaga
tctctcaagctcctcaccagcagcgacgttgagctgacgaacgaagaagggaagaaccag
tacgatgtgatcagtgacgaatgcacagtaagagatggtgaatggcacaagacaagagtt
ggttatgaatccacaacaagaagcagccgtctaccgatcatcgacgttgccgcaggcgat
atcggcggtgttctccaagagtttacttgggaaattgagccagtgtgcttcgtctaa
DBGET
integrated database retrieval system
