Luidia clathrata (European starfish): 117290438
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Entry
117290438 CDS
T10152
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03030
DNA replication
arun03420
Nucleotide excision repair
arun03430
Mismatch repair
arun03440
Homologous recombination
arun03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117290438
03420 Nucleotide excision repair
117290438
03430 Mismatch repair
117290438
03440 Homologous recombination
117290438
03460 Fanconi anemia pathway
117290438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
arun03000
]
117290438
03032 DNA replication proteins [BR:
arun03032
]
117290438
03400 DNA repair and recombination proteins [BR:
arun03400
]
117290438
Transcription factors [BR:
arun03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117290438
DNA replication proteins [BR:
arun03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117290438
DNA repair and recombination proteins [BR:
arun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117290438
MMR (mismatch excision repair)
117290438
DSBR (double strand breaks repair)
HR (homologous recombination)
117290438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
OB_MEIOB_N
Motif
Other DBs
NCBI-GeneID:
117290438
NCBI-ProteinID:
XP_033627742
LinkDB
All DBs
Position
5:4613870..4641732
Genome browser
AA seq
617 aa
AA seq
DB search
MSVQLSSGALKAINDGTQVDKPVFQLLALKKLNQSTTTNNAVDRYRILLSDGIHNNSAML
AVQLNQMVTDGNLEANTVICLERYVCNSLAGNRRVVIVLEVKVIATASQVGGKMGNPVAL
PLGPSTGGGSNGQQAATPQQPMRQPAASPMSVNKGSSFQGAGGSYNKPNYGGAAASGMSP
PKQAQPISSLTPYQNRWTIKARVSSKSNIRTWSNSRGEGKLFSLDLCDQSGEIRATAFKD
QCDKFYDMIEVGKVYYISRGSLKSANRQYTSITNDYEMTFNNDTTVVPCEEEDESIPTMQ
FDFRTVSQLENMSKDTMLDIIGVVKSTGDVSTITTKTTNRELTKRELQIIDDSEKIVNLT
LWGNDAEKFDGSSNPVIAVKGARLSDFGGRSLSVLMSSTVQINPDIPRAHQLKGWFDKVG
RTQDVQSISGQRMGGGGGANAKWLTLEEVVSQNLGQGEKPDYFTTKGTIIFMKKDNSMYT
ACSSSECNKKVTDNGDGTYHCEKCAKDYPGFQYRLLLSANIADATNTQWTTMFQDTAEQV
LGKTADELGALRDTDEIGYNNVFEAAAFETFVFRMRIKMETYNEEARLKCTCAGIQPIDN
KELSKKLITDIRALAAA
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacagttatcatccggagccttgaaggcaatcaatgatggtacacaagttgac
aagccggtattccagctcttggcactgaagaaactaaaccaatcaacaactacaaacaat
gccgtggatcgttaccggatactcctttcagatggaattcacaataattcagccatgttg
gctgtgcagttgaaccagatggtaaccgatggcaacctggaagcaaacacagtcatctgc
ctggagcgctacgtctgcaacagcctggcaggtaacaggcgtgtggtgatagtcctggag
gtaaaggtcatagctacagcttctcaggtcgggggcaagatgggtaatccggtcgctctg
cccctgggtcccagcactgggggcggttccaatgggcagcaggctgcaacaccacaacaa
ccaatgagacaaccagcagcctcaccgatgtcagtcaataagggtagcagcttccaggga
gctggtggtagctacaacaagccaaactatggaggtgccgccgcttcagggatgagtcca
cctaaacaagctcagccaatcagcagtctcacaccttaccagaacaggtggaccatcaag
gcccgcgtgtccagcaagtctaatatccggacttggagtaactccagaggagagggcaag
ctgttctcattggacctctgcgatcagtctggagagatcagagccacggcattcaaagat
cagtgcgacaaattctatgacatgattgaggtcggaaaggtttactacatatctcgaggc
tctttgaagtccgccaacagacaatacacgtccattaccaacgactacgagatgacgttc
aacaacgacacgacggtggtgccatgcgaagaggaagatgagtccatccctacgatgcag
tttgatttcaggacggtctcgcagctggagaacatgagcaaggatactatgcttgatatc
attggtgtggtgaagagtaccggtgatgtatctacgataacaaccaagacgactaaccgt
gagctgaccaagagggagcttcaaatcattgatgattccgagaagattgtcaatctcaca
ctgtggggaaatgatgctgaaaagtttgatggatccagtaacccggtgattgcagtgaag
ggagccagactgtctgattttggtgggcgttctctctcggtactcatgtctagtacggtg
cagatcaatcccgacatcccacgagcacaccaacttaaaggatggtttgacaaggttggc
cgtacgcaggatgtccagtccatctctggacagaggatgggcgggggaggtggggctaac
gccaaatggttgaccctagaagaggtcgtctcacagaaccttggacaaggagaaaagcct
gactacttcaccacaaaggggacgatcatcttcatgaagaaggataacagcatgtacacg
gcgtgttcatcgtcggaatgcaataagaaagtcactgataatggggatggaacgtaccat
tgtgagaagtgtgccaaggattaccctggtttccagtatagactactgctttctgccaac
attgcggatgccaccaacacacaatggacaaccatgttccaggatacagcagagcaggtt
ctcgggaaaacggcggacgaactgggggcactccgagatacggatgaaattggttacaac
aatgtctttgaagcggctgcctttgagacatttgttttccggatgcgcatcaagatggaa
acatataatgaggaggctcgactaaagtgtacatgtgctggtatccaaccaattgacaac
aaggaactctccaagaaactcatcacagacatcagagctctggctgcagcctaa
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