Luidia clathrata (European starfish): 117291492
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Entry
117291492 CDS
T10152
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
arun Luidia clathrata (European starfish)
Pathway
arun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117291492
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arun00536
]
117291492
Glycosaminoglycan binding proteins [BR:
arun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117291492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
117291492
NCBI-ProteinID:
XP_033629122
LinkDB
All DBs
Position
6:complement(14189419..14239038)
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AA seq
1591 aa
AA seq
DB search
MRDLTNTATDHEATSFVVPALTDRWSQFSLSVIDDMATLFFNCSTYTSQSLSRPKGWKLT
IPSDAAVFIGSQGFRLEEQMNFMGSIQTLEITNGRHEAELRCEDEDTGESFKRPTIAKRD
TSSSDALITNKDNASQNAKLNEFFPSGSADSGSGISTTEHSISFTEDLPVSTNLPFTNKI
PTPPRLPSTTPLATKESDIKSGLEFESTLIPVIVNDEPRTTAENSQLFRPTMVSAPSGME
TETPKTVTETLTGMETQPRTVPPMVHLTTTESSVKQTASITTAAPTRKVPSSPSGTETAV
EIIPETASTMKMAKTPLVHIKTTEHPVKETTAMVTPTTKVSSSPTGMETATTTPLDMQTT
ASPIPERTLPAAVQTDEPSLIDPVTLPPTSTESMMTTSVPMVTATARSSQTLQPPETPTD
GLGTVTVSASTPLVKVVPTSTPRPSKPSLTPIVQVISGSPGVPGINGGPGPKGEPGTDGD
LGIPGLDGDSGPPGVAGKNGEKGEKGDSGLRGMKGELGDPGLTGPVGQDGLPGVAGPLGD
QGLPGMEGPTGPVGSKGQKGEAGADGSSKLPDLESLRGHKGEKGDVGMKGDQGMQGVQGN
DGQVGPQGETGEHGQKGEPGEGLPGLEGPTGPIGPQGLPGDMATAIEIPIFDFFDEGSGY
ADLMGKRGKKGDDGDPGPQGFTGIQGPVGPEGPPGTLGLVGAPGPPGMAGVPGIPGRPGI
VGSNYTVVEGPPGRDGFNGSQGPPGIQGPAGPTGPSGQDGLPGRRGEKGESGLDGINGMK
GDTGMQGPPGPPGPPGKVYVMPTEMSASTMPFSGGDMDTGSGNMPMPTKSTLKNADELEV
ITGDAGSPGPPGAQGEQGLEGPPGERGPKGDPGSIGPKGPQGRVGKPGPRGLRGDDGKDG
EPGSQGKQGVKGVPGIGLEGPAGDLGPQGLPGMPGEQGIQGPPGPPGEMLIDVDGSMAEK
GERGLPGDEGPPGARGFKGDAGLNGIPGFHGEKGDVGPAGPIGPMGVEGPQGSQGFTGEP
GEPGFPGVDGLNGLPGPRGPQGLKGEPYLPDETEMIFYKGQRGPRGARGPKGHFGIPGRP
GSHGDTGPAGLSGPPGIDGRPGIGLRGDKGDHGERGQKGESGAGGLGLGLGVKGEKGDMG
EPGPSGKGGSNGPQGQPGFPGVDGLTGPRGLPGSQGPEGRPGASGFPGVDGLSGSVGPQG
PKGEKGDSSVFNGEINIGPPGIPGKPGPAGESIPGEPGRPGEPGVPGYGIPGEQGPPGPP
GPPGSSRQPIVNGDIIPIEGPPGPTGAPGQPGRSGEPGVPGIVGPVGPRGERGHRGLPGS
SGDGTLTSFSSINDMIRHAASLSPGTIAFVSDVQELYLRKNDGMTQILLGATFNLDPVPP
TTTSQSSPTTERLITLPPTKPSLPGPDIALGDDPMLYMYALNNPMTGSEHSRGSLGGLNG
ADYHCYQQAQQQQLRGTYRAFLSSRIQDVKSVVNKEYHHLPVANAKGEIMFNSWEEIFNG
TEAPFDNDKHIFSFDGKDVMTDREWNMKYVWHGSYSNGARMTDSYCEEWRTRDHEASGQA
SPLVKHKLLGQELQLCSEALAVLCVQISPQK
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgagggacttgaccaacactgcaacggaccacgaggcgacgtcctttgtggtgccggct
ttgacggatcgctggtctcagttctcgttgagcgtcatcgacgacatggccacgctgttc
tttaactgtagcacatacaccagtcagtcgttgagtaggccgaagggttggaagctgact
attccttctgatgcagcagtgtttatagggagtcagggatttagactggaagagcagatg
aatttcatgggttcaattcaaaccttggagataactaacggacggcacgaggctgagctt
cgatgtgaggatgaagacactggggagtctttcaagcgacccaccatcgccaaacgagac
acgtcttcctcagatgctttaataacaaacaaagacaacgcctctcaaaatgctaagcta
aatgaattcttcccgtctggaagtgcagatagcggtagtggcatatcaacaacagaacac
agcatatcattcactgaagacctgcccgtatctacaaatttaccattcacaaataaaata
ccgacaccaccaaggttgccatccacaactccccttgccaccaaggagagcgacataaaa
tcagggctagaatttgaatcaaccctgataccggttattgtcaacgatgaaccgagaacg
accgccgaaaactcacaactttttagaccaacaatggtcagtgcaccatcgggtatggaa
acagaaacaccgaaaacggttaccgaaacactcaccggaatggaaacacaaccaaggact
gtcccgcctatggttcatctaacgaccactgagtcttctgttaagcagacagcatcgatc
acaactgctgctcctaccagaaaggtaccctcatccccctctggaacagagacagctgta
gagataattccagaaacggcaagtacgatgaaaatggccaaaacacctttggttcatatc
aaaaccactgagcatcctgtaaaggagaccacagcgatggtcactcctaccacaaaagtg
tcatcgtcccccactggaatggagacggctacaacgacccctctggacatgcagacaact
gcttctccgattccagaacgcactttgccagcagcagttcaaactgatgaaccatcttta
atagaccctgttacgttaccaccaacgagtacagagtctatgatgaccacatctgtaccc
atggtaaccgcaacagccagatcgagccagacactccaacctccagaaacgccaacagat
ggcctagggacagtaacggtgtctgcctcgacaccattagtcaaggttgtgccaacctca
accccaagaccctccaagccttcccttacccctatcgtccaggtaatcagtggttcaccg
ggggtacctggcatcaatggaggacctggacccaaaggtgaaccaggaactgatggtgat
cttggtataccgggacttgacggagattcaggacctcctggtgttgcaggtaaaaatgga
gagaaaggagagaaaggagattctggtctccgtggaatgaagggagagcttggtgatcca
ggcctcactggacctgtgggtcaagacgggttaccgggtgtggcaggtccactcggtgat
cagggcttaccagggatggagggtcccactgggcctgttggatccaagggacagaaggga
gaggcaggtgcagatggatcttctaaacttccagatcttgaaagcctccgtggacataag
ggagaaaagggtgatgttggaatgaaaggagaccagggtatgcagggtgttcagggcaac
gacggacaagtaggaccacaaggtgaaacaggagaacatggtcagaagggtgaacctggt
gaaggattaccgggactggaaggccctacgggacccattggaccacaaggactgcctggt
gacatggcaacagctattgaaatcccaatatttgacttctttgatgaaggctccgggtat
gctgacttaatgggaaagcgtggtaagaagggtgacgacggtgacccaggtccacaaggg
ttcactgggatccaaggccccgtgggtccagagggtcctccaggtaccttggggctagtc
ggagctcctggtcccccaggtatggctggtgtgcctggtatacccggtagaccgggcatt
gttggtagcaactacactgttgttgaaggaccgccaggtagagacggattcaatggtagc
caaggaccaccagggattcaaggacctgctggaccgactgggccctctggacaggatgga
ctccctggaaggcgtggagaaaaaggagaatctggactggacggaatcaatggaatgaag
ggtgatacaggaatgcaaggaccgccaggcccacctggcccaccgggaaaagtatacgtc
atgccaacagaaatgtcagcttccactatgccgtttagtggtggagacatggacactgga
agtggtaacatgcctatgccaacgaagtcgaccttaaaaaatgctgatgagttggaggtg
atcacaggagatgctggatccccaggaccaccaggggctcagggtgagcaaggcttagaa
ggaccccctggcgagaggggacctaagggtgacccaggatccattggtcctaaaggacca
cagggccgtgttggcaagccaggacctcgaggactaaggggagatgacggcaaagacggt
gaacctggatctcaggggaaacagggtgtgaagggcgttccaggtattggattggagggt
ccagcgggtgatcttggaccacaaggactcccaggaatgccaggagaacagggcattcaa
ggaccaccgggaccgccaggagaaatgcttattgatgtggatggatccatggcagaaaag
ggtgagaggggactaccaggagatgaaggcccaccaggcgctcgaggatttaagggggat
gctggcttgaacggaattccaggtttccatggtgagaagggtgatgttggcccagctggg
ccgatcgggccgatgggtgtcgaaggacctcaaggaagtcagggatttacaggggagcct
ggagaacctggattcccaggagtggatggcttgaatggtttaccaggaccaagagggcca
cagggattgaagggtgagccttatctacctgatgagacggagatgattttctataagggt
cagcgaggacccaggggagcgagaggacctaaaggtcactttggcattccaggaagaccg
ggtagccatggtgacacagggccagctggattgtccggaccaccaggaattgacggccga
cctggtatcggattaagaggcgacaagggggatcatggtgaacggggtcagaaaggagag
tctggtgccggaggtcttggtcttggtctaggggtaaagggtgagaaaggagacatgggt
gagccaggaccttcagggaagggagggtccaatggacctcaaggacaaccaggttttcct
ggtgtagatggtttgacaggacctcgtgggttgccaggttcacagggaccagaaggaagg
cctggtgcctcaggtttccctggtgttgatggactttccgggtcagtgggaccacaagga
ccaaaaggagaaaagggagattcttctgtattcaacggagagattaacatcggtccgcca
ggtattcctggcaaaccgggacctgctggtgagagtattccgggtgagccaggccgtcca
ggtgaaccaggtgtacctgggtatggcatccccggagagcagggaccacccggtcctcct
ggccctcctggttcttcacgtcaacctattgtaaatggcgacattatcccaatagagggt
cctccaggcccaacaggtgcccccggtcaaccaggtaggtcaggtgaacccggtgtacct
ggtatagttggaccagtcggacctagaggggaacgagggcatcgagggctccctggcagc
tctggggatggcacgttgacgtcttttagttccatcaatgatatgataagacatgcggct
agtctgtctccaggaacaattgcatttgtctcggatgtgcaggagctgtacttgaggaaa
aacgatggaatgactcaaatactgctcggagctacatttaaccttgacccagtgccaccc
actaccacctcacaatcttcccccactacggaaagactgattactctaccaccaacaaaa
ccctcccttcctggacctgatatcgccctcggtgatgatccaatgttatacatgtatgca
ctcaataatccaatgactggtagtgaacacagtcgtggaagcctcggtggtttgaatggc
gctgactaccactgttatcaacaagcccagcagcagcagctgagaggcacctacagagcc
ttcttgtcatctagaatacaagatgtcaaatcggtcgtcaataaagaatatcatcaccta
ccagtagccaatgctaagggtgaaataatgtttaattcatgggaagagatcttcaatggc
acagaagcgccttttgacaacgataagcacatcttctcttttgatggcaaagatgtgatg
acagatagagaatggaatatgaagtacgtatggcacggttcctattccaacggggctcgc
atgacggacagctattgtgaagaatggcgtactcgggatcacgaagccagcggtcaagcc
agtccattggtcaagcataaactcctcggccaggagctccaactatgcagtgaagcgcta
gccgtactatgtgtgcagatatcacctcaaaagtag
DBGET
integrated database retrieval system
