Luidia clathrata (European starfish): 117292001
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Entry
117292001 CDS
T10152
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117292001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arun03021
]
117292001
03019 Messenger RNA biogenesis [BR:
arun03019
]
117292001
Transcription machinery [BR:
arun03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117292001
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117292001
U7-dependent histone pre-mRNA processing factors
117292001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
117292001
NCBI-ProteinID:
XP_033629883
LinkDB
All DBs
Position
1:29249006..29282438
Genome browser
AA seq
1491 aa
AA seq
DB search
MSLRSTMDADSSRRSIASQYFMDEESSSLAEGINVSDRVIELINQAHLMTKDAQKIAHLK
HVQELIVHKDPTLLDNFLDEVLQFQLDKSADVRKFVIGFIEEACKKDNDMLCSVVPHLNS
MLGDSAQYVAVIKKIILCSMQLYKVAMKWLVNARTFGEEMEAVWDLIQEIKGKVFIMLDS
ENDGIRTHSVKYMESLVLVESARVPASELPKKVEADISLDQIPDDHGLLKRDELEKDGLV
GFDLLLSLLASPSITSVNLMACMGSLTSIAKQRPQFMPRVIQAFETLHVNLPPTLAKSQV
SSVRKHLKMQLLTVLHHPSSFTLHSNISTLLTDLGASDSEIAKHMPKIRESSKRPRPTDD
EATASSSKKTKTTIVKTIQQVMDEDEMGRETPLHPSMLPSIPSTSKAGVQAATKISVVDV
LAEELTPLLQNVENIANLVLISMVTLPENMPPQFQATYTPIAAAGTDSQIGHLARMLSSQ
IAAAGIKPSNFNEEDADAADKENKSKNQKPTGIPVLGVTEEEGRKKPGLPFQAPQGVPKP
RARMKQFKLNDVTVPLEPIVANQLVSGALSRIIDCEKLCLQGGAPQARIKILVGLVTQFG
GDLFPMLKTHVLEDLRAHSELAFAWLYQEYSNYQGYMPRFLEQEVTMNRYDKLLCAMLMT
LLERPDQRDGLFTRLVMEAPLITERALKVIRKFCEDETHFFTGMHALRELILKRPADIKR
YLMELLDLTFHERTEVRSQATQYVKRLYERQDLKETIESFASKCLQLLLTELPSAALVKR
TSENPESEEVGTAWAEPSIKLCLYLYLALLPSNHKLIHGLATVYVSTSALIKRTVLRVLE
APVRGMGMSSPELLLLVENCPKGAETLVTRMLHILTDKAPPSQDLVKRVRDLYLKRVSDV
RFLIPVLIGLEKKEVIAALPKLIKLNPIVVKEVFHRLLMSHQGDNSAGQSPLTPAELLIA
LHNIDTAKCDIKSIIKATSLCFNEKAIYTQEVLAVVMQQLMEQTTIPTLLMRTVIQSLGM
YPRLSGFVMNILQRLIVKQVWKFPKVWEGFVKCCERTKPQSFQVLLQLSVEQLKNVFEMS
PDMRIPMLQHVQTFTPHQQKHIPLPIMTVLETDPFAEKKQKEEDEKNKREDEIKAKKEKE
AKDKEQARLYQQKLKEERMKQEKLKREEAEKAAKERAEKMRAQKEVAAKAAEKVALEAKA
KKEAEEQKKKEEADKIAQEWKEKQKIWQEAKMKAAREAGQRAAEEAKKKREQRAAAMKAA
QEEKEKKNQLEQEKSKKLEEQRKEELEKKRKEEDAKKLEDKKQEEKKQEEKKQEEKKQEE
KKQEEKKQEEALKKAMEERKQKEEQVKKAEEEKKRADELRKQEQERKKQEELKNKEEQEL
KKKEAEAVKEEEDMQQESPEGDEPTVEEDEDQASEDEEDDKEEEMDEGQSSDLLGAADSE
SMDTEDGTPSEMQAQIGRGRGRGGRGRGRGAKKLQSPAPAPGTRKSTRLKK
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgagtttacgttcaaccatggatgccgatagcagccggcggtccattgcatcgcaatac
tttatggatgaggagtcttcgtcattagccgagggaatcaatgtctcagatcgagtgatt
gagttgataaatcaggcgcatttgatgacaaaagatgctcagaagatcgctcatctcaaa
catgtacaagagctgattgtacacaaggatcctactctcttggataatttccttgatgaa
gttctacagttccaacttgataaatcagctgatgtcagaaagtttgttattggatttata
gaagaggcatgcaagaaggacaacgatatgttatgcagtgtggttccacatctgaactct
atgttgggagattcggcgcagtatgttgcagttataaagaagattatcttgtgcagtatg
caactgtataaggttgctatgaagtggttggtgaatgccaggacgtttggcgaggagatg
gaggctgtctgggatctcatccaagaaatcaaagggaaggtcttcatcatgttggattct
gagaatgatggaataagaacccattctgtcaagtacatggagtcactagtgttggtggag
tcggccagagtcccagcctctgagttaccaaagaaagtagaagcagatatctctttagat
cagattccggacgatcatggtctactaaagcgtgatgagcttgagaaagatggcctagtt
ggatttgatttactgctgagtcttcttgcttctccaagtattaccagcgtcaacttgatg
gcctgtatgggctctcttacttccattgctaagcaacggccacagttcatgccgagagtg
attcaagcatttgagacacttcatgtcaatttaccaccaacgctggctaaatcacaagtc
agcagtgttcggaaacatttaaagatgcaactgttgacagtgctgcatcacccatcttca
tttactctacattccaatatctcaacgttgctgacagacttaggagcgtcggattcagag
attgcgaaacacatgccaaagatacgggagagctccaagcgccctcgacccacagatgat
gaagcaactgcaagttctagcaagaaaacaaaaactactatcgtcaagactatccagcaa
gtcatggacgaagatgaaatgggacgagagactccactccatccatccatgctcccttca
ataccgagtaccagtaaagccggtgtccaggcagccactaagatctccgttgtagatgta
ctggccgaggagctgacgccattgctgcagaacgtcgagaatattgctaaccttgttctc
ataagcatggtaacgctcccagagaacatgccaccccagttccaggctacctacaccccc
attgcggccgctggaacagacagccagataggccacttggcacgcatgctgagcagtcag
attgctgctgcgggaatcaaaccaagcaatttcaatgaggaggacgctgatgctgcggac
aaagaaaacaagagcaagaaccagaagccgactggtatcccagtgctaggagtgacggaa
gaggaaggtcggaagaagccaggtcttcctttccaagctcctcaaggcgttcctaaaccc
agggctagaatgaagcagttcaagttgaatgatgtcacagtgcccctggaacccatagtg
gccaatcagttggtcagcggagcactctcaagaattatagactgtgaaaagctgtgtctg
cagggaggtgcaccccaggctaggatcaagattcttgtgggccttgtcactcagtttggt
ggtgatctctttccaatgcttaagacccacgttcttgaggaccttcgagcccactctgag
cttgcctttgcttggctgtatcaagagtactccaactaccagggttacatgccacgcttc
ctggaacaagaagtcactatgaatcgatatgacaagcttctatgcgccatgttaatgacg
ctgctggagagaccggaccagcgagatgggttgttcactcgcctagtaatggaagctcca
ttaattacagagagagccctgaaagtcattcgaaagttttgtgaagatgagacgcatttt
ttcaccggtatgcacgctctgcgtgagctgatactgaagcgacctgcggatattaagcgc
tacttgatggagcttcttgacttgacctttcatgagcgcaccgaggtcaggtcacaggcc
acacagtacgtcaaaagactgtatgagagacaggatctcaaggaaaccattgagagcttt
gccagtaaatgtctgcaactcctactgactgagttaccgagtgcagcccttgtcaaacgt
acctctgagaaccccgagtcagaggaagtaggcactgcctgggctgagccatccatcaag
ctatgtctgtatctctacctagccctgttgcctagcaatcataaacttatccatgggctt
gctacagtgtatgttagcacctcagctcttatcaagagaacagtgcttcgagttcttgaa
gccccggtacgagggatgggtatgtcatccccagagctccttctcctggttgagaattgc
cccaaaggagcggaaacactcgtcactagaatgcttcatattctcacagataaagcccca
ccgtctcaggatcttgtgaagcgagtccgagatctctacctcaagagagtgtctgacgtc
cgcttcctcatcccagtcctaattggattagaaaagaaagaggtgatagctgccctgcct
aagttgatcaaactgaaccccatcgtagtgaaggaggtattccatcgtctactgatgagc
caccagggggataacagtgccggtcagagcccactgacaccagccgaacttctcattgcg
ctgcacaacattgatacagccaagtgtgatattaaatccatcattaaagccaccagcttg
tgtttcaatgagaaggccatctacacccaggaggtcctagctgtggtcatgcagcaactg
atggaacagaccaccattccaactctactgatgcggacagtcattcaatccctgggtatg
tacccgaggttaagtggcttcgtcatgaacatcctacaacgactcatcgtcaaacaggtc
tggaaattccccaaggtgtgggaaggattcgtcaaatgttgcgagcgcacaaaaccgcag
tctttccaggtgcttctacagctctctgtggaacagctcaagaatgtatttgagatgagt
ccagacatgaggataccaatgttacaacatgtccaaaccttcactccacatcagcaaaag
catattccactcccgatcatgaccgtcttggaaacagatccttttgcagagaaaaagcag
aaggaagaggatgaaaagaacaagcgggaggatgaaataaaagccaagaaggagaaagag
gcaaaagacaaggagcaggcacgactttaccaacagaagctgaaggaagagaggatgaag
caggagaaactaaaacgggaagaggcagagaaagccgccaaggaaagagcggagaaaatg
agagcacaaaaggaggtcgccgcgaaggctgctgagaaagtagcgttggaagccaaagcg
aagaaagaagctgaagagcagaagaaaaaggaagaggcggataaaattgcccaggagtgg
aaagagaagcagaagatctggcaggaagcaaaaatgaaggctgcgagagaggcaggacag
agagctgccgaggaggcaaaaaagaagcgagagcagagagcggcagcgatgaaggctgct
caggaagagaaggagaagaaaaaccagttggagcaggaaaagtccaagaaactagaagaa
cagcgtaaggaggagcttgaaaagaaaaggaaagaggaagatgcgaagaaactggaagac
aagaaacaggaagaaaagaaacaggaagaaaagaaacaggaagaaaagaaacaggaagaa
aagaaacaggaagaaaagaaacaggaagaagctttgaagaaagcgatggaagaacggaaa
caaaaggaggagcaggtaaagaaggcagaggaggaaaagaaacgagcagatgagttgagg
aaacaagagcaggaaaggaaaaaacaagaagagttaaaaaacaaagaagagcaagaacta
aagaaaaaagaggcagaggcagtcaaggaggaggaggacatgcagcaagaaagtccagaa
ggggatgaaccgacagttgaagaagacgaagatcaagcttcagaagatgaggaagatgac
aaagaagaagaaatggatgaaggtcagtcgtctgatctgttaggagcagccgattctgag
agcatggatactgaagatggaacgccaagtgagatgcaggcacagattggaaggggtaga
gggaggggtgggcgtggacgagggaggggcgccaagaaattacagtcgcccgcaccagct
cctggaactaggaaaagcacaagacttaagaagtaa
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integrated database retrieval system
