KEGG   Luidia clathrata (European starfish): 117292468
Entry
117292468         CDS       T10152                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
arun  Luidia clathrata (European starfish)
Pathway
arun03030  DNA replication
arun03410  Base excision repair
arun03420  Nucleotide excision repair
arun03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:arun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117292468
   03410 Base excision repair
    117292468
   03420 Nucleotide excision repair
    117292468
   03430 Mismatch repair
    117292468
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:arun03032]
    117292468
   03400 DNA repair and recombination proteins [BR:arun03400]
    117292468
Enzymes [BR:arun01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117292468
    6.5.1.6  DNA ligase (ATP or NAD+)
     117292468
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     117292468
DNA replication proteins [BR:arun03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    117292468
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     117292468
DNA repair and recombination proteins [BR:arun03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     117292468
   NER (nucleotide excision repair)
    Other NER factors
     117292468
   MMR (mismatch excision repair)
    Other MMR factors
     117292468
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C NCH4
Other DBs
NCBI-GeneID: 117292468
NCBI-ProteinID: XP_033630407
LinkDB
Position
7:11517266..11544084
AA seq 1074 aa
MSVVIARSCRRFVKVISGVQRRKFGAEIQRSYWCLALFCRRQRNCVEIQAGSFKTNSAGK
MAQRSIMSFFSPKRQIGTKDKVTTADCKKDDRSPLRVKNGTSASPVEPTRKKSRRILDSD
DEDASENLHNGSKGDTPTKETTPTKETTPIKSKATPSKDTPMEVETPKRKQEASGAASMT
PDLKPDSPSTPSHPIVTVSPSSGGIPLRKTARKHMRKRKAEETDESGDASPNSKEDSEMK
KMKTSSSPVQEKMKTSSSPIQEKNNKSGDVDEKTQPLVSKVKVEKKEELDRGDDLIQEEV
KGQGEKPEGKSKKEKSPKSKKSEKKEKKSETKKEKTPPKKGTKREVKKPSPQEEPMETDE
EVVQEKSPKVKKEVSSPVSSKTVKKSQEPEDDKKTPSKETKTPAKNFFGMSSKSSSDKIS
YNPGASHYHPVNSAYWKQGEKVPYFALAQTFEIIEATSGRLKTIEILSDFLTSVLVLSPQ
DLEMCIYLCLNKIAPAYEGIELGIGETLLMKAIAQSTGRTLEKVKADAATQGDLGLVAQS
SRSNQRTMFTPPRLTVLKVFNTLKEIATMSGNSSMSRKIDKIKGLLVACRDCESKYLIRS
LGGKLRIGLAEQSVLVAIGHAAVITPPGTDPSKISAKSKISDSMKKKMDDAALIIKTTYC
ELPNYGAIVPVLLEHGLEELPNHCKLTPGIPLKPMLAHPTKGVSEVLNRFQNMAFTCEYK
YDGERAQIHLLDNGEIHIYSRNQENNTSKYPDIIKRLPSAYSADKVKSCVLDAEAVAWDR
ENQQILPFQVLSTRKRKDADESEIKVQVCLFVFDLLYLNGESLVTKTLRKRRDLLHSHFS
PVEGEFMYATSMISTDTEDIAVFLDESIKGNCEGLMVKTLDDDATYEIARRSHNWLKLKK
DYLEGVGDTLDLVVIGGYHGRGKRAGTYGGFLLACYDEENEEFQTICKIGTGLKDDELDS
HSKFFKTHVIEKPRPYYRHDSSHIPDHWFDAVQVWEVKAADLSISPTHRAAIGIVDPEKG
ISLRFPRFLRVRDDKKPEEATSSSQVGTLYNSQDQIKNQKASGVFKTKDNEDFY
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgagtgttgtaattgcaagaagctgcagacggtttgtgaaagtgatttcgggagtgcag
cggagaaaattcggggccgaaatacagagaagttattggtgtcttgccttgttttgcaga
cgacagcgaaattgtgttgaaattcaagcaggtagcttcaagacaaattcagccggcaag
atggctcagcgatccatcatgtccttctttagcccaaagaggcaaattggaacgaaagat
aaagtgacaactgccgactgcaaaaaagatgacaggtcacccctaagagtaaagaatggg
accagcgcttcccccgtcgaaccgactcgtaagaaatcacgccgcatcctggacagtgac
gatgaagatgccagtgaaaacttacacaacggaagcaaaggggacacgcccactaaggag
accacacccactaaggagaccacacccatcaagtctaaggccacacctagcaaggacaca
cccatggaagtggaaacacccaagcggaagcaagaggcatccggtgcagcctcaatgacc
cctgacctcaaaccggactcaccttcgaccccatcacatcctatagtgactgtctctcct
tcatcaggaggcatcccactcagaaaaactgcaaggaagcacatgaggaagaggaaagct
gaggagactgatgagtctggggatgcttctccaaactctaaggaggattctgagatgaag
aagatgaagacatcatcttcacccgtccaagaaaagatgaagacctcatcttcacccatc
caagaaaagaataacaaatctggcgatgttgatgagaaaacccaacctttggtgtcaaaa
gtcaaagtagaaaagaaagaggaacttgacagaggtgatgatttaatccaggaagaggtc
aaaggtcaaggggaaaaaccagagggcaaatcaaagaaggaaaagtctcccaagagtaaa
aaatctgagaaaaaggagaagaagtcagagacaaaaaaggagaaaacaccacccaaaaag
ggcaccaaaagggaagtgaagaagccatcgccacaagaggaaccaatggaaacggatgaa
gaagttgttcaagaaaagtcgcccaaggtgaagaaggaggtttcgtcacctgtaagcagt
aaaacagtcaagaaaagccaagagcctgaggatgataagaagactccatctaaagagacg
aagacaccagccaagaatttctttggaatgtcgtccaagtcttcctcggataagatatcg
tacaatccgggagcatctcactaccatcctgtcaacagtgcctactggaagcaaggagaa
aaagtaccatactttgccctagctcaaacctttgagatcattgaggcaacatcaggtcgt
ttgaagaccatcgagatcctgtcggatttcttgacgtctgtcttggtgctcagtccccaa
gacttagagatgtgcatctacttgtgcctcaataagatcgctccggcttatgaagggata
gagttagggattggagagacactgctcatgaaagccatcgctcaaagcacaggtcgaacg
ttagagaaagtcaaagctgatgcagctacacaaggggatcttggactcgttgctcagagt
agccgtagcaaccagcgaacgatgtttaccccaccgagactgactgtgctgaaagtgttc
aacactcttaaggaaatcgctacaatgtctggcaactcttcgatgtcgaggaagattgat
aagattaagggtctgttggttgcatgcagggattgtgaatccaagtatcttattaggtca
cttggtgggaaactacgcataggtctagcagaacagtctgtactcgttgctattggtcat
gcagctgtcattactccccctggaacagatccaagtaaaatttctgccaagtctaagata
tcagactcaatgaagaagaagatggatgatgctgctctcattatcaagacgacatattgt
gagcttccaaactacggagctatagttcctgtccttctggagcacggacttgaagagcta
cccaaccattgcaagctgactccaggcatccccctcaagcccatgctggcccatcccacc
aaaggggtatcggaagtcctcaataggttccagaatatggcgtttacttgtgaatataaa
tatgacggagagagagctcagattcatctgcttgataatggtgagattcacatctacagt
agaaatcaagagaacaatacttccaaatatccagacattatcaaacggttaccaagcgct
tacagtgccgacaaggtgaagtcatgcgtgttggatgctgaagccgttgcctgggatcga
gaaaatcagcagattctgccatttcaagttcttagtacgaggaagcgtaaagatgcagat
gaatctgaaatcaaagttcaagtctgcctctttgtctttgatctcttgtatctaaatgga
gagtctctggtaactaagacgcttcgtaagagacgtgatttacttcattcccacttcagt
ccggttgaaggagagttcatgtacgctacatccatgatctctacagacacagaagatatt
gctgtcttcctcgatgaatctatcaaaggtaactgtgaagggttgatggtaaagacactg
gatgacgatgccacatatgagattgcgaggcgctcacacaactggctcaaattgaagaaa
gactaccttgaaggtgttggcgacacccttgatttggtggtgattggaggttaccacggg
cgtggcaagagggcaggaacatacggaggattcctattggcttgttacgatgaagaaaat
gaagagttccagacaatctgtaaaattggaaccggactaaaagatgatgagttagactca
cacagtaagtttttcaaaactcacgtcatcgagaagccccgtccgtactatcgccatgac
agcagccacatccctgaccattggtttgatgcggttcaggtttgggaggtcaaagcggcc
gatctctctatatcaccaacccaccgagcggccatcggcattgttgaccccgagaaggga
atctcgttaagatttcctcgtttcctgagggtacgagacgataagaaacctgaggaggca
acaagcagctcacaggttgggacgctttataacagtcaagaccagattaagaatcagaaa
gcgtctggcgtcttcaagactaaggacaatgaagacttctattga

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