Luidia clathrata (European starfish): 117293302
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Entry
117293302 CDS
T10152
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03013
Nucleocytoplasmic transport
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117293302
09122 Translation
03013 Nucleocytoplasmic transport
117293302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117293302
03041 Spliceosome [BR:
arun03041
]
117293302
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117293302
Spliceosome [BR:
arun03041
]
Complex C
Other components
EJC/TREX
117293302
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117293302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
SCAN
Motif
Other DBs
NCBI-GeneID:
117293302
NCBI-ProteinID:
XP_033631441
LinkDB
All DBs
Position
8:20414239..20448846
Genome browser
AA seq
1573 aa
AA seq
DB search
MAQFMEIEELCKTWEKTGRNEFLKQCRSQIALATNDGIVSADSQGLRDALYGIIWQCLKG
AFKPDVATAALADVSHMHAGIGSLIADTFSIIDIETVCLETKSEREILFELLKLCVKSFL
SGSMLKERMEYETLEEIKVIQSKLTFSQKYVRLKTKLFYKQQKFNLLREESEGYSKLGAE
LAQLSCGTQSNHEQLLESIKSLIGCFDLDPNRVLDIILEAFECSPQMDQLFVPLLQNYMC
EPLTICHVLGFKFHFYKEENIATPDSLQKVAALLLQHELVDLDDLYPHLMPSDTDIMQTY
KKSITEARQFARKMTIVLLSDREKEEEQAEKDKENKDERALDNQKIGLIEAMLRIGDWSH
AKQLIDRLPHFSAVSHAPVAKALCDLVGSMIQPLYKDYAMPKGAKSSSVNPPTNSKSISV
PKALLQLSPTFRICNYLGPYAGSQPVLIWKLVRLGKVVLNKRASAQEQVKEQWEEVYRNL
LSLIEGTLLPSMSTLDSNACLSEEMWSLLKLMPYNIRYCLYGRWKNSTYAVHPPLIRIKA
TTTDRAKYIMKRLTKDNVKPLGRQLGKLSHVNPGILFEYVLSTIQRYDNFIGPVVDSLKY
LTSLSYDVLAYCVIEALANPEKERMKHDDTNLSLWIQSLASFCGTVFRKYNIDLTGLLQY
VTNQMKACKSYDLLILREIIVKMAGIEVTEEMTPDQLDALAGGELLRAEGGYFSQVRNTK
KSSQRLKDALLTDSLGVALCMLMSQERFHVVFKKGIDVHVKLLGQLHDQCQDTLVQLGGF
LANQLGSEDYTKHLPALSTMVTEFHLTPECAFFLCRPMCTHAINSKFDEFRKLDRSANSS
QKLSSQQKMQCYVKAVQTVLSSLVDSVRELHIPKVWDDISPQFYCTFWTLSMYDLYVPDM
SYDKEVNKIKQQVNSLEDNKDMVSTKRKKERERHNMIMEKLRDEQKKQVEHCQRVLARLK
SECDNWFTARSTKNETITQFLQLCIFPRCCFTASDALYCAKFVLTVHQLKTSNFSTLLCY
DRVFQDITYTLASCTENEASRYGRFLSEMLKTVQKWHSDKAIYEKECGNYIGFVTVLRAS
GAESSNKADQLDYENFRHVCHKWQYKLTKAVVSCLESKDYTQIRNTLILLTKILMYFPLV
LNLSVVLEKRVDKIRAEEKDKRPDLFALAMGYSGQLKARKSHMIAEDQFHSKDVKSQSSS
STKKSTAPSTATSADSAGTSGDTKTDVTATAAMSQERSSGSKSSSNSHSSTTKKSYSSSM
SGPLSINIKTETKSETRDDTKNDRGHKEDKKEEKVKNHKDKTRKKEEKVTRQEKTTPSAD
RSQEKVHKSKRTSAGADGEIKEERKSSERSQRGESIASNSSHGSTGTASHGSAGTVSHKA
SPAREATDREHKRRKIGHQSPNTSNSQEKAKESESLERGEREREGRRDKEKKPGEKKRDH
SEGDKEGHESKRRKDDELGMRKKSSSPSVREDKDKMKMPRTTSVVRPSSSGDASTNGERS
SSKQKEMPKESSKSRKEGRGEEASSDKPVKESSKRDSRGEDGRKEEARKSKREAKEEDRD
EDRHHSSSRKRRP
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtttatggagattgaagagttgtgcaaaacctgggagaaaacgggccgtaat
gagtttttaaagcagtgtcgctctcagattgccctggcaacgaatgatggcatcgtatca
gctgactctcaaggattacgagatgctttgtatggcatcatttggcagtgcctcaaaggg
gcattcaaaccggacgtcgcaacagcagctctcgctgatgtttctcacatgcacgccggc
attggttcccttatagcagacacattcagcatcattgatattgaaacagtgtgtctggag
accaaatcagagagggagattctatttgagttgttgaagctgtgtgttaaaagttttcta
agtgggtccatgctgaaggaacgcatggagtatgaaacacttgaagaaatcaaagtcatc
cagagcaagctaaccttcagtcaaaaatacgtacgacttaaaacaaagctgttctacaag
cagcagaagttcaacctcctacgtgaagagagtgaaggttacagcaaactaggggcggag
ctagctcagctttcatgtgggacccaaagcaatcatgaacagctactagaaagtatcaaa
tcacttataggttgctttgatctggatcctaaccgtgtcctggacatcatcctggaggcg
tttgaatgttccccacagatggaccaactgtttgtaccgttactacagaactacatgtgt
gaaccgctgactatatgccacgttctgggcttcaagtttcacttctacaaggaagaaaac
attgcaacaccagattctcttcagaaagtagctgcgttgcttctacaacatgaactagtg
gacttggatgacctgtacccacatttgatgccatcagacacagatatcatgcaaacctac
aaaaagtccatcacagaggctcgtcagtttgctcgtaagatgaccattgtcctgctgtct
gatcgagagaaagaagaagagcaagcggagaaagataaagagaacaaagatgaaagggct
ctagataatcagaagattggtttgattgaagcaatgctgaggatcggtgattggtctcat
gctaagcaactcattgaccgcttaccacacttcagtgctgtgtctcatgccccagtagct
aaagcactctgtgatctcgtcggatctatgattcaacctctctacaaagattacgcaatg
cccaaaggagcaaagagttcatccgtcaatcctccaaccaacagtaaatccatctcagtc
cccaaggctctcctccagctaagccccaccttcaggatatgtaactacctgggtccgtac
gccggctctcagccggtcttgatttggaagctggtacgacttggcaaggtggtgctgaat
aagagagcctcggcgcaggaacaggttaaagaacaatgggaggaggtttatcgcaacctg
ttatcactgattgagggcactctattaccatctatgagtacgctagacagcaatgcttgc
ctctcagaagagatgtggagtctacttaaactcatgccctacaatatcagatattgtctg
tacggtcgttggaagaacagtacctacgccgtccatcctccattgattcgaatcaaagca
accactacggatagagccaaatacatcatgaagcgactgactaaagataatgtcaaacca
ctgggacgccagctgggcaaactgagtcacgtcaatccgggaatcctctttgaatatgta
ttatccacaattcagagatatgataacttcattggacctgtggtggactcactcaagtac
ctgacatcattgtcttatgatgtcctagcatactgtgtaatcgaagccctagccaatcca
gagaaggaacggatgaaacacgacgacacaaacctatctctctggatacagagtctggcc
agtttctgtgggacagtgttccgtaagtacaacattgacctgactggtctgctacagtat
gtgaccaatcagatgaaggcatgtaagagttatgatcttctgatcttacgagagattatc
gtcaagatggccgggattgaagtcactgaggagatgacacctgatcagcttgatgcgctg
gctggaggagaactgctcagagccgagggcggctacttttcacaggtccgtaacaccaag
aagtcgtctcagcgtcttaaagatgctctccttacagacagcctgggtgtggcactttgc
atgttgatgtctcaagaaagattccatgtggtcttcaagaaagggattgatgttcacgtc
aagttgctcggtcaactccatgaccagtgtcaagacacgttggttcaacttggaggattt
cttgccaaccagcttggttctgaagactacaccaagcatctaccagcattatccaccatg
gtgactgagtttcatcttacacctgagtgtgccttctttctctgcagaccaatgtgtacg
catgcaattaattctaaatttgatgagtttcgtaagcttgatcggtcagccaatagcagc
cagaagctatctagtcaacagaagatgcagtgttacgtcaaggcagttcagactgtcctc
agctcgctggttgacagtgttagagagctacatattcccaaagtatgggatgatatcagt
ccccagttttactgcaccttctggacactgtccatgtacgatctgtacgttcctgacatg
agctatgataaagaagtcaataagatcaaacaacaggtcaacagtctagaggacaacaaa
gatatggtatcaacaaagcggaagaaggaacgtgaacgacacaacatgattatggagaag
ctacgagatgagcagaagaaacaagtggagcattgtcaacgagtactggctagactcaag
agtgaatgtgataactggttcactgcaaggtccaccaagaacgagacgataactcagttt
cttcagctgtgcatcttcccaagatgctgcttcacggccagcgacgccttgtactgcgct
aagtttgttctcactgtccaccagctcaagacatcgaacttctcaacgttactttgttac
gacagggtgttccaggacatcacgtacaccttagcaagctgtacagagaatgaagcaagt
cgttacggtcgcttcctaagtgaaatgctgaagactgttcagaaatggcatagtgacaaa
gccatctacgaaaaggaatgtgggaactacattggatttgtgactgtactacgagcaagc
ggggctgagtccagcaacaaggccgatcagttagactatgaaaacttcagacatgtttgt
cataaatggcagtataaactaaccaaggctgtagtttcctgtctagagtcaaaggactac
acccagattagaaacacgttgatcctgctaacgaagattttaatgtactttccgttggtg
ctgaatctgagtgtcgtcttggagaaaagagtggataagattagagcggaggagaaggat
aaacgacctgacctgtttgctctcgctatggggtactctggacagttgaaggctcgtaag
tctcacatgattgctgaagatcagttccacagtaaagacgttaagtcgcagtcctcatcg
agtactaagaagagtacagctcctagtacagcgacttcagcagactcagcaggtacctct
ggggataccaagactgatgtaacggctactgcagctatgtctcaagagaggtcatcggga
agtaagtcctcttccaacagccactcctccacgaccaagaaatcttacagttctagcatg
agtgggcccttatcaatcaacatcaagactgaaacaaaatcggaaacaagggatgataca
aagaatgacagaggccacaaggaggacaagaaggaagagaaagtcaagaaccacaaagac
aaaactcgcaaaaaagaggagaaagtcaccagacaagagaagacaacgccctccgctgac
cgtagccaagagaaggtgcacaaatccaagcggacttcggctggcgctgatggagagatt
aaggaggagaggaagagtagcgagagatctcaacgaggcgagagtatagcatctaactcc
agccacggctcaacggggacagcatctcacggctcagcggggacagtatctcataaagcg
tctccagccagagaggcaactgatcgagagcataaacgacgcaagatcggtcaccagtct
ccaaatacaagcaatagccaggagaaagcaaaggaaagcgaatcattggagcgaggcgaa
cgggaacgagaaggcagacgagataaagagaagaaacctggagagaagaaacgagatcac
tctgaaggagacaaggagggacatgaatccaagaggagaaaggatgacgaactaggaatg
agaaagaaatccagttcaccgagtgtgagagaagataaggataaaatgaagatgccaaga
actacgagcgtagttcgtccctcaagctcgggggatgcttctaccaatggagagagatcc
tccagtaaacagaaggagatgcccaaggagagttccaagtctcgtaaagagggccgaggc
gaggaggctagttccgataaaccggtcaaggagtcatccaagagagattcaagaggagag
gatgggcggaaggaagaggcgagaaagagtaaacgagaagccaaggaggaagacagagac
gaagacagacatcattccagctcacggaagcgaagaccttga
DBGET
integrated database retrieval system
