Luidia clathrata (European starfish): 117293376
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Entry
117293376 CDS
T10152
Name
(RefSeq) nuclear pore complex protein Nup54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117293376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117293376
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117293376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Vps52_CC
DUF3461
MscS_TM
XhlA
TFIIA
Motif
Other DBs
NCBI-GeneID:
117293376
NCBI-ProteinID:
XP_033631566
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All DBs
Position
8:complement(12802011..12811901)
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AA seq
513 aa
AA seq
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MSFSGFGTPFGGQSTTASKPAFGFGTTATASTATPFGFGTTSKTTAAAPSLFGGFGTTTG
TATTASTGFGLGTTGVASTGLGGFGTGIGTGLSTGFGTTTTQLQQQQQQQQQQQLQQQQQ
QQGVGADLMSISSALLMPTIYGDERDAIIAKWNQLQAFWGTGKGYINQSSSVPFTPENPF
CRFKTVGYSVKPTSKDEDGLVILHFKKKEEEIRSLQQQLVDSLFKILGSKATLSVCVESV
KQLPDGKTEVVIYIQERAPTGLTRKIPASTAFSFFSQANTKMQLGNLGVVDMVPKLALSE
AQVDTYLGTPPLGYDPRLWRQAKLDNPDPEKLVPVPMVGFHTLKSRLENQEQQTKQHQAR
LDMISQDLETLQHKQTTVQAKIAEYKRRHLELSHRVLGVMVRQETQRKAGVAIGMEEEQL
RTRLEGIQAEVNAPTQMKGRLNEMMSQIRLHSHLPGGRGSEQHTIASEMQQEIRQHLKHQ
QEGLSHLIATIKSDLVDLKLIDQGLQETALQQR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttcgggttttgggacaccttttggtggacaaagtaccacagcttccaaacct
gcgtttgggtttgggactactgcgacagcttcaacagccacaccatttggttttggaaca
acgagcaagacaacagcggctgctccctctctctttggagggtttgggacaacaacagga
acagcaacgactgccagcactgggtttggtttgggtaccacgggggttgcatctacaggg
ttaggtgggtttggtacgggcattggtaccgggctctctacaggctttggtacaacaacg
acacaactgcagcaacaacaacaacaacaacaacaacaacagctgcagcaacaacaacaa
cagcaaggcgtaggagcagatttaatgagtatatcaagtgccctgctgatgccgaccatc
tacggagacgagagggatgccatcatcgccaaatggaaccagcttcaagcattctggggt
actgggaagggttacatcaaccagagtagctcagttccctttacacctgagaatccattc
tgcagattcaagacagtggggtacagcgtgaagcccacctctaaagatgaggatggtttg
gtcatcctccactttaagaagaaggaggaggaaatccgcagcttgcaacagcagctggtg
gactcgctgttcaaaatcctggggagtaaagcgacgttatccgtgtgcgtggaaagcgtc
aaacagcttccagacggaaagacagaggtggtgatctacatccaggagcgagcacccacc
ggcctgaccaggaagattccagcctcgacagctttcagcttcttcagccaggccaacacc
aagatgcagcttggcaacctgggtgtggtcgacatggtacccaagcttgccctctcagag
gcgcaggtagacacatacctgggcaccccaccactaggatacgatccaaggctttggagg
caggcaaaacttgacaatcctgacccagaaaaactggttccggtgccaatggttggattc
cacacactaaagagcagactggaaaaccaagagcagcagaccaaacagcaccaagccaga
ttagacatgatcagtcaagatctggagacattacaacacaagcagacgacagttcaagcc
aagattgcagagtacaagagacgacacctggaactgtcccaccgtgtccttggggtgatg
gtgcggcaggagacgcaacgcaaagcgggcgtggccatcgggatggaggaagagcagctt
cggacgaggctggagggtatacaggcagaggtcaatgcaccgacacagatgaagggacga
ctgaatgaaatgatgtcacagattaggctccacagtcacctacctggcggacgtgggtct
gagcagcacacgatagccagtgaaatgcagcaggaaattagacagcacctgaaacaccag
caagaaggtttgagtcacctcatcgctaccatcaagagcgaccttgtagatcttaaactc
atcgatcaaggtctacaagaaactgccttacaacaacgctga
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