Luidia clathrata (European starfish): 117293792
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Entry
117293792 CDS
T10152
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117293792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117293792
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117293792
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
Motif
Other DBs
NCBI-GeneID:
117293792
NCBI-ProteinID:
XP_033632126
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All DBs
Position
8:complement(<2749225..2775506)
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AA seq
967 aa
AA seq
DB search
MLTSKSFVKKTKRGAVIKIVREHYLRDDIWCGSELCELCQQESPILQREPHIDSVLCNFP
HYILPDTNVLLHQIDILEDNIIKNVILLQTVQQEAKHRNLPVHKRTRDLVANKDKKFYVF
TNEHHRATYSERKPGETANDYSDRLIRNAAKWYQDHLQQGKKPVSVVLLSNDKANRDKAL
EEGLLAYTVHDYVKSLTAKPELVDRLAQLANAEKDRKQKDSDISSDGGRKVLFPEHMSST
QLQTAIKTNKIKQGTFHASTENFREGFVSIHGEEQMIFIKGLANQNRAVNDDIVAIVILP
KHQWTCPSSVVAVDNANKEEDAEKDLEEGDELSGTSQPENSRPTGKIVGIVKRNWRPYCG
VLQPSNNTGGTRHLFMAAERKIPKIRIETRQAATLQGQRIIVGIDSWPRNSRYPLGHFVR
QLGEIGDRDTENEVLLLEHDVPHLPFSEAVLSFLPSLPWGITQEDVAVREDLRHLDICSV
DPPGCTDIDDALHCRNIDNGNLEVGVHIADVTHFIRPGNALDDEASSRGTTVYLVDKRID
MVPELLSSNLCSLRGKVERFAFSCIWEITQQAEIVNVRFTKSIICSRAAFTYEEAQLRID
DDSMQDNVTLGLRGLNRLAKILKKKRMDNGALVLASPEIRFSMDSETHDPIEVQQKEMRE
TNSMVEEFMLLANISVAKKIHDEFPQCACLRRHPTPSPSSYEPVIKAALAKGVELEVDSG
HALAESLDKAELPAEPFFNKLLRMMTTRCMTQALYFSSGTLPYEDFFHYGLAAPIYTHFT
SPIRRYSDILVHRALAVAIGADKSYPSLLDKQKVQSMCNQLNMRHRMAQYAGRASVALHT
QIFFKNKIVDEDGFIIFVRKNAVQVFIPKFGFEGTLFLKGQNKEMDGLFKYNEEECTQIA
GDVTLRGFDKVRVQISAETSNIQHQRLRLRLVEPKVPGFSVDPQPKSKDELDIQPPPTKK
QKCTNSS
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgtccaagagttttgtgaaaaagacgaaaagaggagctgtgataaagatagtg
cgagagcactatcttcgcgatgacatttggtgtggatcagaattatgtgaactttgtcaa
caggagtcgccaattttgcaacgtgaaccgcacatagacagtgtattgtgtaactttccg
cactatatcctgcctgataccaacgtgcttttacaccagattgacatcttagaagacaac
attatcaagaatgttatccttctacagacggttcagcaagaggccaaacaccgcaatctt
cctgttcataagaggacacgagaccttgttgcaaataaagacaagaaattctacgtcttt
acaaatgaacaccacagggcaacgtactctgaaagaaaacctggcgaaactgcaaacgat
tacagcgatcgattgataagaaatgcagccaaatggtaccaagatcatctccaacaaggg
aagaaacctgtttctgtagtcttgttgtcaaatgacaaggccaatagagacaaagccttg
gaagaaggtctgttggcttatacagttcatgattatgtgaagtcacttactgccaagcca
gagctggtagacaggctagctcaacttgctaatgctgagaaggatagaaaacagaaggat
agtgacataagttctgatggtggacggaaggttctattccctgaacacatgtcatccact
cagcttcaaacagccatcaagaccaacaagatcaaacagggaactttccacgcgagcacg
gaaaacttcagggagggctttgtcagtatacatggtgaagaacagatgatattcatcaag
ggtttagccaatcagaatcgagctgtgaacgatgacatagtagctatagtgatattacca
aagcaccagtggacctgcccatcatctgtcgttgccgttgacaacgctaacaaagaggaa
gatgctgaaaaggatttagaagaaggtgatgaactatcagggacgagccaacctgaaaac
tctcgtccaactgggaagatcgtcggaattgtaaagcgtaactggagaccttactgtggt
gtacttcagccatcaaacaacactgggggaacacgtcacttgttcatggctgcagagaga
aagattccaaagatacgaattgaaacgagacaagccgctacgctacaaggacagaggatt
attgtcggcatcgacagctggccacggaactctaggtatcctctgggtcactttgtccgt
cagctcggtgagattggagacagagacacagagaatgaggttcttcttcttgagcatgat
gtacctcatcttcccttctcagaggcagtgctgagtttccttccatcacttccatggggc
atcactcaagaggatgtggctgttcgtgaagacctacgtcatctagacatctgcagtgta
gatccaccaggatgtacagatattgacgatgcattacattgtagaaacattgacaatggt
aacctagaggtaggtgtacacattgcagacgttacacatttcatccggccagggaatgca
ctcgatgatgaagcatccagtcgaggtacaactgtctatcttgtggataagaggattgat
atggttcctgagttactgagttctaatctgtgttctctaagaggtaaagtagagaggttc
gctttctcctgtatctgggagatcactcaacaggctgagattgttaacgtcaggtttact
aagagcatcatctgctcaagggctgcatttacctatgaagaagcgcaacttagaattgat
gatgattcaatgcaggacaacgttactcttggcctcagaggtctgaacagactagccaag
atactcaagaagaaacgcatggacaatggagcactagtattggcgtctccggagattcgc
ttcagtatggatagtgagacacatgaccctattgaagtccagcagaaagaaatgagagaa
actaactccatggtggaggagttcatgctgctggcaaacatctcagtagctaagaagata
catgacgagtttcctcaatgtgcttgcttacgtcgacatcctacaccatcaccctctagc
tatgaacccgtcattaaagctgctctggctaagggtgttgagctggaggttgacagtggc
catgctttagctgaatccttagataaagcagagttacccgccgaacctttctttaataag
cttctacgaatgatgacaacacgttgcatgacacaggcgctgtactttagtagtggcaca
ttaccatatgaagatttctttcattacggattagctgcacctatctatacacacttcaca
tcgcccattcgaagatactctgatatattggttcatcgagctttggcagtagcgattggt
gcagataagtcttatccatcgttgcttgacaaacagaaagttcagtcaatgtgtaaccaa
ctcaatatgcgtcaccgtatggcacagtatgcaggacgggcatcagtagctctccacaca
cagattttcttcaagaacaagatcgttgacgaggatggattcatcatctttgtcaggaag
aatgcagtacaggtcttcattccaaagtttggttttgaggggacgctctttctcaagggg
caaaacaaagagatggatggacttttcaagtacaacgaagaggaatgtacccagatagct
ggagatgtcaccttgcgcggcttcgataaggtcagagttcaaatcagtgcagagacatct
aacatccagcatcagaggctgcggttgcgactagttgaaccaaaggttccaggtttcagc
gttgatccacaaccaaagtccaaggatgagttggatatccagccacctccgaccaagaaa
caaaaatgcaccaactcttcataa
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