Luidia clathrata (European starfish): 117294470
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Entry
117294470 CDS
T10152
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03020
RNA polymerase
arun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117294470
09124 Replication and repair
03420 Nucleotide excision repair
117294470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arun03021
]
117294470
03400 DNA repair and recombination proteins [BR:
arun03400
]
117294470
Enzymes [BR:
arun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117294470
Transcription machinery [BR:
arun03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117294470
DNA repair and recombination proteins [BR:
arun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117294470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
117294470
NCBI-ProteinID:
XP_033632783
LinkDB
All DBs
Position
9:complement(15074845..15087709)
Genome browser
AA seq
1178 aa
AA seq
DB search
MYDPDEEVYEEDDSDEVTQDRWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPAVDLQAEAQHTTTEAEIPTRYVLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTY
SAPLYVDIMKTVIQDGEETSETQHLKTFIGRIPIMLRSTYCLLSGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNSVYVFCKKDSKYAFTAECRSCLENSSRPTSTIWVHLM
AKGGQGSRKSAIGQRIAAILPYIRLEIPIMIVFRALGFVADRDILEHIVYDFDDPEMMEM
VKPSLDEAFVVQEQSVALNFIGARGAKPGVTKERRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYCVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLAFLFRNLFKNLLKEVRMYSQ
KFIDKGKDFSVELAIKTRIITDGLKYSLATGNWGDQKKAHAARAGVSQVLNRLTFVSTLS
HLRRLNSPVGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAINEATKIFVNGCWVGIHRDPEQLMNTLRKLRRQMDIIVSE
VSMVRDIREREIRIYTDAGRICRPLLIVEHQKLLLKKRHIDMLKEREYNNYSWQDLVASG
VVEYIDTNEEETIMLAMTPDDLIEKGSMYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVILNSGAVDRGYFRSVFYRSYKDSESKKMDQDEVFEKPTRETCKGMR
PAVYDKLEEDGIIPPGSRVSGDDVLIGKTVTEPEDDDELDGGSRRFTKRDCSTFMRRTET
GIIDQVMLSINQEGYKFCKIKVRSVRVPQIGDKFASRHGQKGTCGMKYRPEDMPFTCEGI
TPDIIINPHAIPSRMTVGHLIECLQGKVSSNKGEIGDATPFNDSVNVQKISNLLHEYGYH
LRGNEVLYCGFTGRKIGVQVFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRD
GGLRFGEMERDCQISHGSAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFECRGCK
NKTQISQIRLPYACKLLFQELMSMSIAPRMMVMPEGKA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatccagatgaagaggtgtacgaagaagatgactcggatgaggttacccaagac
agatggcaagaggcctgctggattgtcatcagctcttactttgacgagaagggtctcgtg
cgccagcagcttgactcgtttgatgagttcatacagatgtccgtgcagcggattgtcgag
gacgcgccagctgtggacctacaagctgaggctcaacacacaacgacggaagcagaaatt
cctacacggtatgtgctgaagtttgagcaaatctacctgtccaagccgacacattgggag
aaagatggttccccaagtcccatgatgccaaatgaagccagactacgaaatctcacgtac
tcagcaccgctgtatgtagacatcatgaagacagtgatccaagatggtgaagagacttca
gagacgcagcatctcaagacattcattggcaggattccgattatgctccgctcaacatac
tgcttgcttagtggcctgacagatcgtgatttgacggagttgaatgaatgtccactggac
cctggtggttacttcatcatcaatggctccgagaaggtcctgattgcgcaagagaagatg
gccaccaactctgtctatgtgttctgcaaaaaagactccaagtacgcgttcactgctgag
tgtcggtcgtgtttggagaattcgtcccgtcctaccagtaccatatgggtacatctcatg
gccaagggtgggcagggttcaagaaagagtgccatcggacagcgtattgcagccatcctt
ccgtacattcgtctggagattcccatcatgatcgtcttcagagctttggggtttgtcgct
gatcgtgacatcttggagcacattgtctatgactttgacgatccagagatgatggagatg
gttaaaccttcccttgatgaagcttttgttgtccaagagcagagcgtagcgctgaacttc
attggagctcgtggtgcaaaaccaggtgttaccaaggagcggagaatcaaatatgcccgg
gagatcttacagaaagaaatgttgcctcacgtaggagtcagtgacttctgtgaaaccaag
aaggcctacttcttagggtactgtgtgcacagactccttcttgcagcccttggtcgtaga
gaagtcgacgatcgtgatcactacggtaacaaaagactggacctggccggccccctcctt
gcattcctcttcagaaacctcttcaagaatcttctgaaggaagtccggatgtactctcag
aagtttatcgacaagggcaaggattttagcgtagagttggccattaagacacgcatcata
acagatggtctcaagtactccctagctactggtaattggggtgaccagaagaaggctcat
gctgccagggctggtgtctctcaggtgctaaacagactgacgtttgtgtcaacgctgtcc
catctccgtagactcaactcacccgtcggcagagacggcaagctggccagaccccgtcag
ttacacaacacactctggggtatgatatgccccgctgagacgccagagggtcatgctgtg
ggtcttgtcaagaacctggccctgatggcgtacatctctgtgggctcccagcctagcccc
atcttggagtttcttgaagagtggagcatggagaatctggaggagattgcaccttctgct
attaacgaagccaccaagatctttgttaacggctgttgggtgggcatccatcgtgaccca
gagcagctgatgaacaccctgaggaagcttcgtcgccagatggatatcatcgtctcggag
gtatccatggtcagagatatccgggagagagagatccgaatttacacggacgccggtcgt
atctgtcgacctctcctcatcgtggaacatcagaagctcctcttgaagaagagacatatc
gacatgttgaaagaacgagaatacaacaactacagttggcaagaccttgtcgccagtggt
gtcgttgaatatattgacaccaatgaggaagagaccatcatgctggccatgaccccggat
gacctcatcgagaagggatcaatgtactgttcgacctacacccattgtgagatccacccg
tccatgattcttggtgtgtgtgcgtccattattccattccccgatcataaccagtctcca
cgtaacacctaccaatccgctatggggaagcaagccatgggcgtctacatcaccaactac
cacgtccgcatggacaccctggcccatgtgctgtactaccctcagaagcctttgactacc
acacgttctatggagtaccttagattcagagagctgccagctgggatcaactccatcgtg
gctattgcgtcttacacaggctacaaccaggaggattccgtcatcttgaattccggtgct
gtggatagagggtatttcagatctgtgttctaccgttcatacaaggattctgagtccaag
aagatggaccaagatgaagtctttgagaaaccaacacgagaaacatgcaaaggtatgcgt
ccagccgtctacgataagttagaggaagatgggattatccctcctggctctcgagtgtct
ggagatgatgtcctgatcggaaaaacagtgacagaaccagaagacgatgatgagcttgac
ggaggcagtagacggttcacaaagcgtgactgcagcaccttcatgcgacggaccgagaca
gggatcatagaccaggtgatgctcagcatcaaccaagagggatacaagttctgcaagatc
aaggtgcgatctgtacgtgttcctcagattggagataagtttgccagtcgtcacggtcag
aaaggaacatgcggaatgaagtacagaccagaggacatgccgttcacctgcgagggtatc
accccagatatcatcatcaacccccacgctatccccagtcgtatgaccgttggtcacttg
atcgagtgcctccaggggaaggtttcctctaacaagggtgagattggtgacgctacaccg
ttcaatgactcagtcaatgtgcagaagatctctaacctgctgcatgagtacggctaccac
ctgagagggaatgaggtgctctactgtggttttactggaaggaagattggagtgcaggtg
ttcctggggcccacctactaccagcgtcttaaacatatggtggatgacaagattcactcc
agggcaaggggaccggtgcagattcttaacagacagcccatggagggcagatctcgtgat
ggtggtcttcgttttggcgagatggaacgtgattgtcagatctcccacggctcggcgcaa
ttcttgagagagcgtctttttgaggtgtccgatccctaccgagtccatgtgtgcaacctg
tgtggcttgattgccatcgctaacttgaggaataacacattcgagtgtagaggctgtaag
aacaagacacagatttcccagatccgtctgccgtacgcctgtaagcttctcttccaggag
ttgatgtccatgagcattgccccaagaatgatggtcatgcccgaaggaaaagcctaa
DBGET
integrated database retrieval system
