Luidia clathrata (European starfish): 117295449
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Entry
117295449 CDS
T10152
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03013
Nucleocytoplasmic transport
arun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117295449
03015 mRNA surveillance pathway
117295449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117295449
Enzymes [BR:
arun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117295449
5.6.2.5 RNA 5'-3' helicase
117295449
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117295449
mRNA cycle factors
Common to processing body (P body) and stress granule
117295449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
AAA_16
NPHP3_N
Helicase_RecD
UvrD-helicase
DEAD
nSTAND3
ATPase
SRP54
AAA_22
PhoH
DUF269
AAA
AAA_25
Motif
Other DBs
NCBI-GeneID:
117295449
NCBI-ProteinID:
XP_033634005
LinkDB
All DBs
Position
10:complement(16553524..16569087)
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AA seq
1141 aa
AA seq
DB search
MSVDAYGPSSQSLTFLDTEDGELLGADTQGTDFEYNVGDFTLPSQTQTQSQASQLDVVSQ
SQSQVGLSLDAKPVQNGFVEDNVAATVQTLKDLTFEEDEEETYYTKDLPDHACRYCGIHD
PSAVVLCNSTKKWFCNGRGNTSGSHIINHLVRAKCKEVTLHRDSPVGETALECYNCGCRN
VFLLGFIPAKVDSVVVLLCRQPCATQSNLKDMNWDPTQWQPLIQDRCFLSWLVKVPSEQE
QLRARQISAAQINRLEELWKNNAEATLEDLEKPGADEEPASVMLRYEDAYTYQNIFGPLV
KMEADYDRKTKENQNQSNMSVRWDIGLNRKTRAYFNFPKKEDLKLMQGDELRLRYLGDLQ
EPWSGVGHVVKIPDNYGDEICVEIKISAKVPVNCINNFVVDFVWKSTSFDRMQSALKTLA
VDETAVSSFLYHKLLGHEVENMVIKSNLPKRFSAPNLPELNHSQVSAVRMVLTRPLSLIQ
GPPGTGKTVTSASVVYHLAKQGQGQVLVCAPSNIAVDQLTEKIHRSGLKVVRICAKSREA
IESPVSFLTLHRQVRNMEGNEEQQKLQALKDEIGELSSADEKRFRALKRNNERELLQNAD
VICCTCVGAGDPRLARFRFRAVLIDESTQATEPECLIPIVLGCKQVILVGDHCQLGPVVM
CKKAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAAGDRI
NKAVEFPWPQRDKPMFFYATAGQEEISSSGTSFLNRTEASNVEKITTCFLRAGVKPDQIG
IITPYEGQRAFIVQYMQYSGPLNVKLYQEIEIASVDAFQGREKDYIILSCVRANDHQGIG
FLNDPRRLNVALTRCRYGVIIVGNPKVLSRHPLWNHLLTYYKEHKVLVEGPLNNLKESLI
QFSKPRKLVNTTNPGGRFMTSAMFSAKEAMIPGSIYDRSGMMNGGGSSRFVHGPGRIHDQ
MGYIGPGPAQFAGANVPVPVNMFLPPPPQPGNHFYNQGMPGPPMGGHMPQQRGKGAPPYS
KRRGKPPGQQGQGKGSQQGMGGASQPGNSSQNMSQYNLSMQSQDGSMPFSQGPLTQGMSM
SQPGLSQAGFSLPGLSQPGLSQPELSQDSYLGEEFKSQMDAALSQDSTYQGDRNYQHGFG
Y
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtacggtccgagctcgcagagcttgacttttctggacacggaagac
ggcgagttactgggagccgacacgcaggggacggattttgagtataatgtaggggacttc
accctgccgtctcagacgcagacccaaagccaggcatcgcagcttgatgtcgtgtcgcag
agtcagagccaagttgggttgtctttggatgcaaagccagtacagaatggctttgttgag
gacaacgttgcagctaccgtacaaacactgaaggacttgacttttgaagaagatgaagaa
gagacgtattacaccaaagacctacctgatcatgcatgcaggtattgcggcatccacgat
ccatctgcagtggtattatgcaactccactaagaaatggttctgcaatggccgtggcaac
acctcgggaagccatatcatcaaccacctcgtgagggccaagtgtaaggaggtcaccctt
caccgcgacagtcccgtaggagagactgccctcgagtgttacaactgcggatgtcgcaac
gtgttcctactgggtttcatccctgctaaagttgactcggtcgtcgtgctgctctgccgg
caaccctgtgccacccagagcaacttgaaggacatgaactgggatccaacccagtggcag
cccctgattcaggaccgctgcttcctcagctggttggtcaaggtcccttcggagcaggag
cagctccgagccaggcagatctcggccgctcagatcaatcgactggaggaactgtggaag
aacaacgcagaagccacgctggaagacctggagaaaccgggagctgatgaggagcctgct
tcggtcatgttgagatatgaagacgcctacacctaccagaacatcttcggtcctctggtg
aagatggaggcagattatgatcgcaagaccaaggagaatcagaatcagagtaacatgtct
gtacgttgggacatcggactcaatcgcaagaccagggcttacttcaatttccctaagaaa
gaagatttgaaattgatgcagggagatgagttgaggctgcgctaccttggtgacttgcaa
gaaccttggtcaggagtgggtcatgtagtcaagataccagacaattatggagatgagatt
tgtgttgagattaagataagtgccaaagtacccgtcaactgcatcaacaactttgtggtg
gactttgtgtggaaatccacatcttttgacagaatgcaaagtgccctgaagacgctggca
gtggacgagacagccgtgtctagtttcctgtatcataaactccttggtcatgaggtggag
aacatggtgatcaagagtaacctgcctaagcggttttccgcacccaatctccccgagttg
aaccactctcaagtgtctgctgtgcgcatggtgctcacacgccctctaagtcttattcag
ggcccacccgggacaggaaaaactgtcacctcagccagtgttgtctaccatcttgccaag
caaggacaggggcaagtgttggtgtgtgcacccagtaacatcgctgtggaccaactgact
gagaagatccatcgttctggattgaaggttgtcaggatatgtgccaagagtagagaagct
atcgagtcgccagtctcgttcctcacactccacagacaggtgcgaaacatggaagggaac
gaggagcagcagaaactgcaagctctgaaggatgagatcggagaattgtccagcgctgac
gagaaacgcttccgtgcgctcaagaggaacaatgagagagaactgctccagaatgctgat
gtgatttgctgtacctgtgtaggagcaggggaccctcgtcttgcccggttccgattccga
gccgttctcatcgacgagagtacgcaggccacagaacccgagtgtctcatacccattgtg
ctcggatgcaaacaggtcatcttggtaggggatcattgtcagctaggcccagtggtcatg
tgcaagaaagcggccaatgccggcctctcacagtcgctcttcgagcgtctcgtggtcctg
ggcatccgaccaatcagattgcaggttcagtatcgtatgcatccggccctcagcgctttc
ccatccaacattttctacgagggatctctgcagaatggtgtggcagctggtgatcgaatc
aacaaggcagtggagtttccctggccccagcgagacaaaccgatgttcttctatgccacg
gctggacaagaggagatctccagctccggtacctccttcttaaacagaacggaggcgtct
aatgtcgaaaagatcacaacatgtttcctgcgtgccggcgtcaagcccgaccagattggc
atcatcacaccctacgagggccagcgtgcgttcatcgtccagtacatgcagtacagcggc
cccctgaatgtcaaactctaccaggagatcgagatcgccagcgtcgacgctttccaggga
cgggagaaagactacatcattctgtcgtgtgtccgtgccaatgaccatcagggcatcggg
ttcttgaacgacccacgccgtctgaatgttgctctgactcgctgcaggtatggtgtgatc
atcgtgggtaaccccaaggtcctgtcacgtcacccactgtggaatcaccttctgacctac
tacaaggagcataaggtcctggttgaaggacctcttaataacctgaaggagagtctgatt
cagttcagtaagccaaggaagctcgtcaacacaacaaacccaggtggtcgttttatgacg
tctgcaatgttcagcgccaaggaggccatgataccaggcagtatctatgatagatcaggc
atgatgaatggaggaggatccagtcgttttgttcatggaccaggccgtatccacgaccag
atgggttacatcgggccaggccccgcccaattcgcgggggccaacgtccctgtaccagtc
aacatgttcttgcctccaccccctcaaccaggcaatcacttctacaatcagggcatgccg
gggccaccgatggggggccacatgccacagcagcgggggaagggtgcccctccatactcc
aagaggaggggcaagccacctgggcagcaggggcaagggaaaggctcgcaacaaggaatg
ggcggggctagccagccgggcaactctagccagaatatgtctcagtacaatctctcaatg
cagagtcaggatgggtcgatgccattctcccagggcccactcacccaaggcatgtccatg
agtcaaccgggcctatcccaggctggcttctccctgcctggtctctcccagccaggcctg
tctcagccggagctgtcgcaggacagctacctgggagaagagttcaagtcccagatggat
gcagccctgtctcaggactccacctaccagggcgatcgtaactaccagcacggcttcggt
tattag
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