Luidia clathrata (European starfish): 117297038
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Entry
117297038 CDS
T10152
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117297038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arun03400
]
117297038
DNA repair and recombination proteins [BR:
arun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117297038
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117297038
NCBI-ProteinID:
XP_033636052
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All DBs
Position
11:12194668..12215595
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AA seq
931 aa
AA seq
DB search
MALKSNDAFADNAPEDGFLKCLRSMPVKPATTFRVFDRTEYYTVHGEDAMFAAKECFKTL
GVVKYTGSGEKKVPYVNLSKMNFESMVRDLLLIRQYRVEMYKNMATGKGNDWQVAYKASP
GNLTQFEEILFGNNDMSTSASVIAVKYVSEGSGGQLTVGVGYADATLRELAVCQFTDSEH
FSNLEALLVQLGPKECLIQSQSGEGAVDSAKLKGVLERSGLLVTERARADFGTKDVEQDL
NRLLKGASEEQRNAATLGEMEKTTAVGSLAALIKYLELLGDESNFRQFRLKSFDLTQYMR
LDSSAVRALSLLPSPQDGGNKNACLLGLLNKCKTPQGQRLLAQWIKQPLVDKNKIEERLD
IVEAFVNDVELRQTLQEEQLKRIPDLQRLAKRIQRKKATLEDCYRIFQVVEFMPVLLETL
ERPGIDLLKEVFSNPIMELLLDFAKYQEMVETTIDLDQVKNHEFLIKPNFDEELTNLREK
MDGLENNIQAQLGKAARDLGLEANKTIKLESNNQLGYFFRVTRKEEKVLRNNKKYATIDT
NKNGVRFTQSTLRSLNEEHMSVKEEYNEMQKAIVAEIIGIAAGYVDRMMLLSDIIAQLDV
LVSFAHVSSNAPISYVRPTLSEKGQGGIKLVEARHPCLEVQDDVAFIPNGVTFEREKQMF
YIITGPNMGGKSTFIRQIGVVVLMAQLGCFVPCRSAEISIVDSILARVGAGDSQLKGVST
FMSEMLETASILRSASENSLIIIDELGRGTSTYDGFGLAWAISEHIATKISGFCLFATHF
HELTALADEVQTVNNLHVTALTTDGQLTLLYRVKPGVCDQSFGIHVAELVHFPKKVIDYA
KMKALELEDYQSTGAPGGGSMEGLDAPAAKKRRLEKQEGEMIIDDFLKKVKQLDTETMSD
EHVYEAVQRLKEEVAKKSSPYVQEVLSRSDI
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcactcaagtccaatgatgcctttgcagacaacgctcctgaggatggatttttaaag
tgtctgagatcaatgcccgtgaaaccggcaacaaccttccgagtttttgaccgtacagaa
tattacactgtccatggtgaagatgcaatgtttgcagcaaaagaatgtttcaagacactc
ggtgtagtcaagtacacaggatcaggagagaaaaaggtgccatatgtcaacctgagtaag
atgaactttgagagcatggtgcgagatcttctactcatacgacagtatcgtgtcgagatg
tataagaacatggcaacggggaaaggcaacgactggcaggtggcttacaaggcttctcct
ggtaacctcacccaatttgaagagatcctcttcggtaacaacgacatgtcaacgtcagcc
agtgtgattgctgttaagtacgttagcgagggctcaggggggcagctgactgtcggagtt
ggctatgctgacgctactctgagggaactagccgtgtgtcagtttactgatagtgagcat
ttctccaacttggaggccctactggtgcagctgggtccaaaagagtgcctgatacaatcg
caatcaggcgagggcgctgtggactcggccaaacttaaaggcgtgttagaacgcagtgga
ctcctggtcaccgagcgagcgagggcggactttggcaccaaggacgttgagcaggatctg
aaccgtcttctgaagggagccagcgaggagcaacggaatgctgccaccctgggggagatg
gagaagacaactgccgtgggatcgctggctgcgttgatcaaatatcttgagttacttgga
gatgagagtaacttcagacagtttcgtcttaaatcgtttgatctgacgcagtacatgaga
ctggattcctctgcagtgagagcgctgagtctcctgccatcaccacaggacggcggtaat
aagaatgcatgtcttcttggactccttaataaatgcaaaacccctcaaggtcaaaggtta
cttgcccagtggatcaaacagccgttggtggacaaaaacaaaattgaggagcgtcttgac
atcgttgaggctttcgtgaacgacgtcgaactccgccagactttacaggaggagcagctg
aaacgaatccccgacctccagcgtctcgccaagaggatccagcgcaagaaggccacattg
gaggactgctatcgcatctttcaggtcgttgagttcatgcctgtcttacttgagactcta
gagaggccaggcattgatttattgaaggaggttttcagtaatcccatcatggaattgttg
ctggattttgccaagtaccaagagatggtggagacgaccattgatttagaccaagtgaag
aatcacgagtttctcatcaaaccaaattttgatgaagaactaacgaacttacgggagaag
atggatggtctagaaaataacatccaggctcagctaggcaaggcagcgagggatctcggc
ctggaggccaacaagaccatcaaactagagtccaataaccagctgggatatttcttccgt
gtcacgaggaaggaagaaaaagttttacgaaacaacaagaagtatgccaccatcgacacc
aacaaaaacggagtccgtttcacgcagtccacgttgcgtagtctgaacgaagaacacatg
tcggtcaaggaagagtataatgaaatgcagaaagccatcgttgccgagatcattggtatt
gcagctggttatgttgaccgcatgatgctgttgagtgatatcattgcacagttggacgta
ctagtgagctttgcacatgtgtcctccaatgcccctatctcctacgtccgccctacactg
tcagagaagggacagggtgggatcaagctggtcgaggcaagacacccatgtctggaagta
caggacgatgtcgccttcattccaaacggcgtgacttttgagagggaaaaacaaatgttt
tatatcatcactggaccgaatatgggcggaaaatccactttcataagacagatcggtgtt
gttgtcctgatggctcagcttggatgcttcgtcccgtgtcgatcggccgagatctccatc
gtagattccattctagctagagtaggagcaggagacagtcaacttaaaggcgtctccaca
ttcatgtctgagatgctggagaccgcatccattctccggtctgcatcggaaaactctctt
atcataattgacgagctgggaagagggacgtcgacgtatgatggcttcggactcgcttgg
gcaatctcagagcacatagcaaccaagatatcaggattctgtttatttgctacccatttt
cacgagctgactgcactagccgatgaggtccaaaccgttaacaatctacatgtgacggcg
ctcaccaccgatgggcagctcacacttctctacagagtcaaacctggtgtttgtgaccag
agttttgggatccacgtcgctgagttggtccacttccccaagaaggtgatagactacgct
aagatgaaagcattagagctagaggactaccaaagcactggagccccgggaggagggagc
atggaggggctagatgcaccggctgccaagaagaggagactggaaaaacaggaaggagaa
atgatcattgacgatttcttgaagaaagtgaaacaactcgacacagaaacgatgtctgat
gagcatgtttatgaggcagtgcagcgattaaaagaagaagttgcaaagaagagtagtccg
tatgtacaggaagtgctgtccaggagtgacatttga
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