Luidia clathrata (European starfish): 117298013
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Entry
117298013 CDS
T10152
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117298013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117298013
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117298013
U7-dependent histone pre-mRNA processing factors
117298013
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
117298013
NCBI-ProteinID:
XP_033637127
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Position
1:1536735..1560835
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AA seq
770 aa
AA seq
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MTSIIKLTPFSGVRDESPPCYMLQVDEFRFLLDCGWDEKFNLDYIENLKKHVHQIDAMLL
TFPDHLHLGALPYIVGKCGLTCPIYATIPVYKMGQMFMYDLYQSRHNSEEFDLFTLDDVD
TAFDRIIQLKYSQSTNLRGKGHGLTITPLPAGHMIGGTLWKIVKDGEEEIIYGIDYNHKK
ERHLNGCVLETINRPSLLITDAFNATYIQARRRLRDEQLMTIILNTMRRDGNVLIAVDTA
GRVVELSLLLDQLWRNTESGLSPYSLAMVNNVSYNVVEFAKSQVEWMSDKVMRSFEDKRN
NPFQFKHLKLCHSLKELAKVPEPKVVLASVPDLECGYSRSLFVDWCDNPKNSVVLTCRSS
EGTLARSFIDNIQQKEVTLKLSKRVKLDPEELEVYRIKEKERKAAVKLKQGAELDSSDES
EEEMEIGDAVGHKSSKKQVQHDLMLKTESGKKGTSFFKNAKKSYPMFPFHEERIRWDEYG
ELIKPEDYMITEMNQAEEEKTKAEEDGFDGEDVGEAGADIPTKCVSREVTMEVKCSVNFI
DFEGRSDGESIKKLITQVKPRQLIIVHGAEEPTQHLAEYCRLQLAGTKVFTPSINETMDA
TMESHIYQVRLKDSLVSSLNFSKAKDAELAWIDGMLDLPESASDLGVVKEPEAEAKEEGS
EDKLKAPGLSISNKDNIEGDTDEVIPMLGAIPQLEVPGHNQVYVNAPKFQDLKQVMSRNG
VQAEFTGGVLVCNSVVAIKRNDSGRITLEGCLSPDYFKVRQLLYEQYAII
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgacctccattataaagctgacgccattctccggtgttcgcgatgagtctccaccatgt
tacatgcttcaggtggatgagttcaggttccttctggactgtggatgggatgagaagttt
aacctggactacatagagaacctcaaaaagcatgtccatcagatcgatgcaatgctactc
accttcccagatcatctccacctcggcgctctaccgtacatcgtcggcaaatgtggcctg
acgtgccccatctatgcaaccatacctgtgtacaagatggggcagatgttcatgtacgat
ttataccaatcgagacacaattcggaggagtttgacttgttcacattggatgatgtggac
actgcgtttgatcggattattcagctcaaatactcacagagtaccaatctcagagggaaa
ggacacggcctgacgataactccactgcctgctggtcacatgatcggcggcaccctatgg
aagatcgtcaaggacggtgaagaagagataatttacggaatcgactacaaccacaagaag
gagaggcatctcaatggatgcgtcttggagacgattaatcgaccgtcgcttctcatcacc
gatgccttcaatgcaacgtacatacaggccagaaggagacttcgagatgaacagttaatg
accataatcctaaacacaatgaggcgagacgggaatgtactaatcgcagtcgacacagcc
ggcagggtcgttgaactctcactcctcctggatcaattgtggaggaacacagaatctggg
ctgagtccatactccttagccatggtcaacaatgtcagctataacgtcgtggagtttgca
aagtcacaggtggaatggatgagcgacaaagtgatgcgatctttcgaagacaaacgtaac
aatccattccagtttaaacatctcaaattgtgccactcactgaaagagctggccaaagtc
cccgaacctaaggttgttttagcgagtgtaccagatttggaatgcggttattcccgtagc
ctctttgtggactggtgtgataaccctaagaacagcgtcgtcttgacatgtaggagcagt
gaagggactctcgctcgctcattcattgataacatccaacagaaagaagtcacactcaag
ctcagtaagagagtcaagttggatccagaggagttggaggtgtacagaatcaaagaaaaa
gagagaaaggcggctgtcaaactgaaacaaggtgctgagttagactctagtgatgagagc
gaagaagagatggagattggagatgcagtcggtcacaagagcagcaagaaacaagtccaa
cacgatctcatgctcaagactgagagcgggaagaaaggaacaagtttcttcaagaatgcc
aagaagtcttatccgatgtttcctttccacgaggagagaataagatgggatgagtacggg
gaattgattaaaccagaggactacatgatcactgagatgaaccaagctgaagaagagaaa
accaaagctgaggaggatggttttgatggagaggatgttggtgaagccggggcagatatt
cccacaaaatgtgtctctcgggaggtgaccatggaggtgaaatgctcggtcaactttatt
gactttgaggggcggtcagacggagagtccatcaagaaactcatcactcaggttaagcct
cgtcaactgattattgtacatggcgctgaggagcctactcagcatttagctgagtactgc
aggctacagttagctggaaccaaggtattcactccgagtatcaatgagacaatggatgct
acgatggagagccacatttatcaagtgaggttaaaagactcgctagtcagctcccttaat
ttctccaaagccaaggatgcagagttggcgtggatcgatggcatgcttgacctccccgag
tctgcgtctgaccttggggtcgttaaagaaccagaggctgaggcaaaggaggagggttca
gaagacaagctaaaggcaccaggtttaagcatcagtaataaagacaacattgaaggggat
acagatgaagtgattccaatgctaggagccatcccacaactagaggtccctggtcacaat
caagtttacgtcaacgctcccaagttccaagatctgaaacaagtgatgtcaagaaacggc
gtacaggctgagtttactggtggcgtgctggtctgtaactctgtggttgcaattaaacgg
aatgactctggaaggatcacgttagaaggatgcctcagcccagactactttaaggtcagg
caactattgtacgagcagtatgccattatctaa
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