Luidia clathrata (European starfish): 117298301
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Entry
117298301 CDS
T10152
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
arun Luidia clathrata (European starfish)
Pathway
arun04382
Cornified envelope formation
arun04512
ECM-receptor interaction
arun04518
Integrin signaling
arun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117298301
04518 Integrin signaling
117298301
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117298301
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117298301
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arun04147
]
117298301
00536 Glycosaminoglycan binding proteins [BR:
arun00536
]
117298301
Exosome [BR:
arun04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117298301
Glycosaminoglycan binding proteins [BR:
arun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117298301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117298301
NCBI-ProteinID:
XP_033637345
LinkDB
All DBs
Position
13:complement(11988054..12039932)
Genome browser
AA seq
1753 aa
AA seq
DB search
MKYREVIERHVLVCCLLVVFVWAQWADAACVGCLKDKCICNGTKGEKGNRGHNGLPGHVG
QPGYPGPEGPMGRKGEAGYTGSSGDVGSKGYRGSQGVPGFPGNPGLPGLPGPEGPIGETG
MPGCNGTKGDMGDAGVPGTGPEGPQGPSGLPGSKGEAGEPAVNLPGNKGDRGIPGQSGIP
GQTGLPGYNGNKGDRGTQGLTGERGRPGAPGPQGTPGVGYIGMRGDTGEPGYPGPPGETC
VDNPVGGPGTGETIPGEKGERGMKGMRGDKGSTGERGYTGNPGLYGDKGMTGPKGEYGPT
GKPGKRGKDGSPGTPGFKGDRGPAGVPGASGFNGPEGPKGDKGERGREGLQGPPGTPSDS
TGFGEPGPRGPQGRDGPPGPPGPTGDKGSRGLTGVEGRPGNTGPPGQPGTQGLPGIGDKG
EQGGPGLPGPPGQFGSRGLPGREGPKGDPGMTGLSVQGPPGMDGLPGRGGNPGPPGPPGD
TGSQGLPGIPGNVDGMRGPQGPPGLPGPEGEPGGTGDPGPRGFQGRIGEAGEPCGQCPGG
PAGAKGDPGPDGPSGTPGLAGFDGPQGPPGPPGPRGEVGNDGAPGRNGDPGPGGPFGDKG
DKGDRGPALPGFPGPPGGKGERGYRGDQGDKGAEGFPGPPCEQPAKVTGDKGEPGQQGAP
GPPGSEGQSGVPGERGASIVGNPGPPGPPGQEGETGPRGPFGQKGERGENIFVSEPGQVG
PRGPPGPQGPYGDVGERGPPGPPGPGGIKGSRGFDGPKGDLGEQGPSGVGMPGESGEKGF
RGLPGDQGPQGIPGQRGSNGFPGVEGPQGDKGDSGLPGVPGSQGPRGLKGSVGPLGQPGA
RGSPGGPGANGDIGPPGSLGEKGDRGAFGVSGRPGEPGTPGDSIPGEDGPPGEPGQPGEN
GPPGETGPQGTPGPPGFSAIKGQKGEAGRDGRPGDIGLPGPAGPPGEDGEAGEDGRPGEK
GDRGLGGNPGQPGTPGESGENGLAGLKGEDGSIGLPGLIGSPGGPGRPGERGSPGAEGSK
GDKGFPGPSGQPGLPGQNGQPGPPGPPGADGTPGPVGSKGSRGFSGLEGAKGSIGLKGDD
GSPGLPGLSGNPGLKGQSGDMGAPGSRGGKGEVGPEGTTGAIGPQGSPGLPGEIGNPGLP
GFNGNPGEKGVPGQIGPSGPRGEKGHVMTVPCNLEMKGAQGEVGEKGDFGEPGQNGLNGL
KGDRGTRGFAGLPGPPGDNGEQGEPGLKGDRGLPGDSGLQGPLGPKGDLGRNGVPGSPGV
IGLPGNPGSKGDLGPMGIPGTPGEDGADGENGERGFSGVRGEKGTPGRPGQALVGPKGSS
GLPGIQGRPGAAGNDGLPGLEGRQGEPGMKGERGLVGPEGPTPVVLPGQPGSPGLPGIDG
QLGEKGDSGPSGPRGLPGRPGSRGSPGDNGEDGGAGPIGPKGIQGQKGEPAAAIDMGLMK
GAKGDIGPQGPRGTDGEPGQDGSRGLNGPRGPKGDKGDEGSNGSPGFTGRPGGEGPKGNK
GFAGTPGPRGFPGEPGQDGLPGPPVLTGYFITRHSQTSQVPPCPFGTTRMWEGYSLLYVQ
GNEKAHGQDLGSAGSCLRRFSTMPFMFCNINNICHVASRNDYSYWLSTPEQMPMDMAPFG
GDVLQPFISRCSVCEAPSHVIAVHSQSLNVPSCPQGWRGMWIGYSFMMHTGAGAEGSGQA
LSSPGSCLEDFRSSPFIECHGDGRCNYYATTYSFWLTTVDSDDEFSSPTSETLKAGALLT
RISRCQVCMRDSR
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatcgggaagttatcgaaaggcatgtgttggtatgctgccttttggtcgttttc
gtctgggcacagtgggccgacgcggcctgtgttggatgtctaaaagacaagtgtatatgc
aacggaacaaaaggagaaaagggtaatagaggacacaacggtcttccaggacatgtcgga
caaccaggttacccaggtccagagggccccatgggcaggaaaggagaagcaggttataca
ggatcttcaggtgatgttggatccaaaggataccgaggaagtcaaggagtaccaggattc
cctggtaacccgggtctgcctgggttacctggcccagaaggaccgattggtgagacgggt
atgccgggatgcaatggaaccaagggagacatgggtgatgcaggagtcccagggactggc
ccagaaggacctcaaggaccttcaggactaccaggatcaaagggtgaagccggagagcca
gcagtgaacttgccagggaacaaaggagatcgtgggatcccaggtcaatctggtatacca
ggtcaaacaggtctacctggatacaatggaaacaaaggtgatcgtgggacgcaaggatta
acgggtgagcgaggacggccaggtgccccaggacctcaggggacaccgggtgtcggctac
attggaatgaggggagacactggtgaacctggttaccctggacctcctggggaaacttgt
gtagataaccctgtaggggggccaggcacaggcgagaccatcccaggtgaaaagggagaa
agaggcatgaagggaatgagaggagacaaaggttctactggcgagcgaggctacactggt
aacccgggtctttatggcgacaaaggaatgacaggaccaaagggtgaatatggacccaca
ggaaaaccggggaagcgtggtaaagatggctctccaggaacacctgggtttaagggtgac
cgtggccctgctggagtaccaggtgcatcaggatttaatggccctgaggggcccaaagga
gacaaaggagaacgtggacgtgaagggttgcagggtcctccgggaacgccttccgattct
actggtttcggtgaacctggtccccgtggaccccaggggcgtgatggaccaccaggaccc
cctggaccaaccggagacaaaggatccagaggattgacgggtgttgaaggcagaccaggc
aacactggcccaccaggacagccaggaacacagggcttaccaggaatcggtgataagggt
gaacagggtggtccaggactacctggacccccaggacagtttggttcacgtggtctccca
gggcgtgaaggtcccaaaggagatccaggaatgactggtttatcggtgcaaggcccccca
ggaatggatggtctccctggtagaggaggaaacccaggaccccctggacctcctggtgat
acgggatcccaaggtcttcctggaatccccggtaacgtagacggtatgcgtggtccccaa
ggcccacctggcctccctggtccagagggtgaacccggtggtacaggtgatccaggacct
cgtggtttccaaggaagaattggtgaggctggagagccatgtggtcagtgccccggaggt
cccgctggagctaagggtgaccctggaccagatggtccctcaggaacgcctggtttggct
ggatttgatggacctcaaggaccaccaggaccaccaggacctagaggcgaggttggaaat
gacggagccccaggaagaaatggtgatcctggaccaggtggaccttttggagataagggt
gacaagggtgaccgtggacctgcactccctgggttccctggaccccctggcggtaaagga
gagagaggataccgaggtgatcagggcgacaagggagctgaaggcttcccaggacctccg
tgtgaacaaccagctaaagtaactggtgacaaaggtgagccaggacaacagggtgcacct
ggacccccagggtctgaggggcaatcaggcgtacccggagagcgtggtgcatccattgtg
ggcaaccctggaccacccggtccacccggtcaggaaggagaaactggaccaagaggaccc
tttggtcaaaagggtgagcgtggagagaatatctttgtatctgagccagggcaggtcggt
ccacgaggacccccaggaccacagggtccatatggtgatgtcggagaacgaggaccccca
ggaccccctggtcccggtggaataaagggaagccgtggatttgacggtcctaagggagac
cttggagaacagggaccttctggtgtaggcatgccaggagagagtggtgagaagggattc
cgtggactgccaggtgatcagggacctcagggtattccaggccagagaggttctaatggc
ttccctggtgtggaaggacctcaaggagacaagggtgattctggtctaccaggagtgccc
ggaagccaaggacctcgtgggttgaagggttcagttggtccccttggccagccaggtgca
agaggctcacccggtggtcctggagcaaatggtgatatcggacctccaggatctcttgga
gaaaaaggtgatagaggagcgtttggtgtttctggccgacccggtgagcctggtacccca
ggagattcaatcccaggagaagacggaccacccggtgaaccgggacaaccaggagagaat
ggacctcccggtgagaccggacctcagggtacccctggcccacctggattctccgccatt
aaggggcagaagggtgaagctgggcgagacggacgcccaggagatattgggctacctgga
ccagctggacccccaggagaggacggcgaggcaggcgaagatggcagaccaggagagaaa
ggagatcgaggtttaggtggtaacccaggacaaccgggaacaccgggtgaatccggcgag
aatggattggccggactaaagggtgaagacggcagcattggtctccctggattaatcgga
tctcctggtggcccaggcaggccaggtgaacgaggctctcctggagccgaaggttccaag
ggagataagggtttccctggcccatcaggacaaccaggcttgcccggacagaatggtcag
cctggcccgcctggaccacccggagcagatggtaccccaggcccagtaggatctaaagga
agtcgaggattctctggtttggaaggagcgaaggggagcattgggttgaagggagacgat
ggatcaccaggcttgccgggtttgagcgggaaccctggcctgaagggacagagtggtgat
atgggagccccaggttcccgtggtggtaagggtgaggtaggtccagaaggcactaccggt
gcgatcggtcctcaaggctctcctggtctgcctggagaaatcggaaaccctggactgcct
ggtttcaatggaaatccaggagagaagggagttccaggacaaattggaccctcgggacct
agaggtgaaaagggtcatgtgatgacggtaccatgtaacctggaaatgaagggagcccaa
ggcgaggtcggtgagaagggagattttggtgaacctggacagaatggtttgaatggactc
aagggtgatcgtggaaccagaggtttcgccggtctcccaggtcctcctggtgacaatggc
gaacagggcgagccaggtcttaagggtgatcgtggtctgcctggagattctggactacaa
ggaccactcggacctaaaggagatttaggaaggaacggtgtcccaggatcaccaggtgtt
ataggtcttccaggaaatccaggctctaagggtgatctaggacccatgggtatcccaggc
actccgggtgaagatggtgctgatggtgagaacggagaaagaggtttctcaggtgtgcgt
ggtgagaaaggtacaccaggccgacctggtcaagctctcgttggacccaagggaagctct
ggcctacctggtattcaaggacgtcctggtgctgctggcaatgatggtttaccgggactg
gaaggccgacaaggtgaaccaggaatgaagggagagagaggtctagtaggacccgaaggc
ccaacgcctgtagttctaccaggacaacctggttctccaggtctacccggaatcgatggc
caacttggtgagaagggtgattcaggtccatcgggacctcgtggtctgccaggcagacct
ggctcaagaggatctcctggagataatggtgaagacggcggggcgggaccgatcggaccc
aaaggaattcaaggacagaagggagaaccagctgcagccatagatatgggtctcatgaag
ggagctaagggagatataggaccccagggacccagaggaaccgacggagagcctgggcaa
gacggatcccgtggattgaacggaccgagaggacctaagggagataagggtgatgaggga
tctaatggaagcccaggattcaccggaaggccgggaggtgaaggacccaaaggaaacaaa
ggtttcgctggtactcctggtccgcgtggattccccggagagcctggacaggatggtttg
ccaggcccaccggtccttaccggctacttcatcacaagacatagtcagacctcacaggtt
cctccctgtccgtttggaacgacccgtatgtgggaaggctacagtttgctttacgttcag
ggcaacgagaaagctcatggacaagacttggggagtgccggcagttgcttgagacgcttc
agcaccatgccattcatgttctgcaacatcaacaacatctgccacgtggcctcacgtaat
gactactcctactggctgtccacgccagaacagatgcccatggacatggctccgttcggt
ggtgatgtcctgcagcccttcattagtcgctgttcagtgtgcgaagcgccctcgcatgtc
atcgctgtgcacagtcagtcgctgaatgtaccctcttgcccgcagggatggcgtggaatg
tggataggctacagttttatgatgcacaccggagctggagcggaaggttccggccaggct
ctctcctcgcccggctcctgcctagaggacttccgttcctcccccttcattgaatgccac
ggtgacggccgctgcaactactacgccaccacctacagcttctggctgaccacagtcgac
tctgacgacgagttcagctccccaacgtccgaaaccctcaaagctggtgccctgctaacc
cgcatcagtaggtgccaagtctgcatgcgcgacagtagataa
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integrated database retrieval system
