Luidia clathrata (European starfish): 117298307
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Entry
117298307 CDS
T10152
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
arun Luidia clathrata (European starfish)
Pathway
arun04382
Cornified envelope formation
arun04512
ECM-receptor interaction
arun04518
Integrin signaling
arun04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117298307
04518 Integrin signaling
117298307
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117298307
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117298307
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arun04147
]
117298307
00536 Glycosaminoglycan binding proteins [BR:
arun00536
]
117298307
Exosome [BR:
arun04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117298307
Glycosaminoglycan binding proteins [BR:
arun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117298307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117298307
NCBI-ProteinID:
XP_033637353
LinkDB
All DBs
Position
13:12050140..12112281
Genome browser
AA seq
1768 aa
AA seq
DB search
MKFETFSSFGCRFSPHRTTPGGFSLAMWRWGVITVLLSLAVGTSLAQKSGRECVETCKTC
GCKGRAGRRGVPGPIGLVGQRGPSGIQGSGGVPGPRGDKGDDGALGPRGQKGDQGMTGVP
GYPGLDGYTGQPGPRGQYGDPGVAGCNGTKGEPGRPGIGGYGGRGKPGFNGPKGSKGEPA
PYSPASKGPQGDGGFPGEDGRPGQQGPDGRPGETGDRGPKGYQGPNGLQGYSGANGVDSP
GSKGSKGERGQPGRKGQSDKIPGRGEKGSNFTKGDKGDKGYKGYTGEAGMRGERGDAGTK
GGKGPLGMKGETGVRGIAGPRGPTGFDGLSGAPGFPGDRGFQGSNGYDGLPGYQGINGDI
GMDGPIGRKGEPGIPGEIGDGPVGEPGPDGNRGLPGYPGIRGTVGDTGPEGPEGRLGDVG
AQGETGRPGQSRDGQQGDRGVSGLPGAPGERGDEGNLGPQGRPGDKGAPGISIAGPFGMD
GSPGRPGSIGGKGAVGAQGKPGLPGTTASGEEIVGPIGRPGPEGRRGVKGGQGVQGVSGS
KGFPGLPSAPCPLCPQGQKGATGVPGFPGFPGSYGENGPRGAEGGSGEKGDKGYPGRFGQ
PGFPGIQGPSGFPGDKGDRGEFGTVIEVPGFRGSRGDKGDKGSTGEPGTQGRRQVLDQSQ
LSNKTQKGQRGDTGFPGRRGTPGAPGPAGEDGPDGRRIDGPRGPKGVMGEPGRFGIPGFA
GQKGEPAEAVDTEDPVPGPQGEPGPKGFKGRPGSKGSPGQTGSPGLYGDNGFKGMKGGVG
NPGNPSFPGPKGFPGPRGDKGTVGLSGSIGRPGGEGAPGTPGLPGRPGMFGALGEDGQSG
STGPAGFPGDEGPQGPKGDFGNRGLPGQDGYRGFPGLKGDRGDAGGDGLPGDRGLKGALG
FGFPGRPGQQGRNGARGLPGLEGSQGIPGERGQFGGVGSTGDKGLDGLSGIPGPQGQLGE
PGFPGRAGRPGTFGFRGAFGDIGFDGFNGPKGQKGNPGFPSFPGPRGSPGPRGQPGEDGP
LGQPGEPGEVGSVGFPGRFGEPGDVGNFGDPGEDGEDGLLGPLGLDGRPGEPGFPGQVGD
QGFNGNPGMIGEPGMPGMNGLPGALGGPGRPGMKGTSGPSGFRGTSGLPGDQGLIGRPGP
QGPIGPQGIDGIQGQPGRNGFDGNRGFPGEQGPAGEQGPKGDPFTPNELTEPRPPGPKGE
KGPKGEPGRIGNPGLPGLTGDRGPVGEQGGGGYDGYSGFTGAPGARGDQGLPGLFGLEGP
KGMSGMDGIPGGEGRQGLPGPDGPSGAPGFPGFSGFPGRKGTPGRPGPRGLPGIKGFPGI
QGENGIPAFVAPQGEPGMDGESGPDGLPGPNGNRGRPGFPGLNGLKGDRGDIGPSGPRRP
PVIGLKGVDGEPGRAGRQGPKGRAGDIGLVGEIGESGSVGLKGYNGFDGRDGRPGLMGMR
GSKGLPGDESNAQKGVKGNIGDVGSYGVPGRPGRPGLPGQDGFNGLPGLKGDIGDQGVPG
QVGLNGPPGPGGPRGDFGDSGSQGENGDKGVGGGVGLPGAPPRPQGFIVVRHSQSRNVPQ
CSAGMTTLWSGYSLLYTEGNERAQHQDLGLAGSCLPRFSTMPYIFCNFNEVCNYAQRNDK
SFWLATSEAIPMMPVSGNGIRPFISRCTVCETPSQIIAVHSQDTTLPDCPQNWRSLWIGF
SFAMYTSAGADGGGSPLASPGSCLESFRATPFIECNGRGNCFFYRNTYSFWMTTVDAQEM
FQRQRPQTLKAGSLRTRVSRCQVCQKQM
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaaacattttcctcgtttggctgccgttttagccctcacagaactacccct
ggaggtttttctctcgctatgtggaggtggggtgtgataactgttctactatcgcttgct
gtaggaacaagtttagcccaaaagagcggaagagaatgtgtagaaacatgtaaaacttgc
ggatgcaaaggaagagcagggagaaggggagtaccaggtcccattggccttgtgggacaa
aggggaccttcaggaatacaaggcagtggaggtgtaccgggacccagaggtgacaagggt
gatgatggtgcgctggggcccagaggtcagaaaggtgatcagggaatgaccggtgttcct
ggttacccaggtttggacggctacaccggacagccaggaccaagaggacagtacggagac
ccaggggttgctggatgtaatggcacaaagggtgagcctggtcgaccaggaattggtggc
tacggaggtcgaggtaaaccgggttttaacgggcctaagggcagcaagggagagcctgct
ccttactctccagcttccaaaggaccacaaggtgacggaggctttccaggtgaagacgga
aggcctggacaacaaggacctgatggtcgtcctggagaaactggtgatagaggcccaaaa
ggatatcagggtccgaatggcctgcagggatattccggtgctaatggtgtagactcccct
ggctctaaaggctcaaaaggagagaggggtcaacccggaagaaagggtcagtctgataaa
attccgggtagaggcgagaaaggcagtaatttcactaaaggagacaaaggtgacaagggg
tacaagggttacactggtgaagccggtatgaggggtgagaggggagatgcaggcacaaag
ggtggtaagggccctctagggatgaaaggagagactggcgtacgaggtattgcaggacca
aggggaccaaccgggtttgacggcttatcgggtgctccaggatttccaggcgaccgtggg
ttccaaggaagcaacggttacgatggtctgccaggttatcagggtataaatggtgacatt
ggtatggacggtcccattggacgtaaaggagaaccaggaatcccaggggaaattggcgat
ggacccgtcggtgaacctggacctgatggtaaccgaggtctgccgggataccctggtatt
agaggtaccgttggagacactggacctgaaggccctgagggaagactcggtgatgtgggc
gctcaaggagagaccggaagacctgggcagagtagagacggtcaacaaggagatagagga
gtgtcaggtttacccggtgcacccggagaacgaggagatgagggcaaccttggaccccag
gggcgacctggcgacaagggagcacccggaatctcaatagctggaccttttggtatggat
ggatcccctggaaggcctggatctattggtggaaagggcgctgttggtgcccaaggaaaa
ccaggtcttccaggtaccactgcatccggtgaggagattgttggacccatcggcagacca
ggacctgaaggacgtcgaggtgtcaagggaggccaaggagtgcaaggagtgtctggaagc
aaaggtttcccaggtcttccttctgccccatgcccgttgtgcccccagggccagaaggga
gcaactggtgtgccaggtttcccaggctttccagggtcatacggtgagaatggacctcgt
ggtgccgagggcgggtcaggcgagaagggagacaaaggctaccctggacgatttggacaa
cctggattcccgggaatacaaggacctagtggttttcctggagacaaaggtgacagagga
gaatttggaaccgtcatcgaagttccaggtttccgtggtagccgcggagacaaaggagac
aagggatccactggagagccaggtacccagggacgaagacaagttctggatcaaagtcaa
ctctccaacaaaacacaaaagggtcaacgtggagacacagggtttcctggtcgaaggggt
acccctggtgccccaggtcctgccggtgaagatggtcccgatggtcggcgtattgatgga
ccacgaggtcctaagggtgtgatgggagagcccggacgctttggcatcccaggttttgca
ggacagaaaggagaaccagctgaggcggtggacactgaggatcccgtccctggcccacag
ggtgagcccggacccaaagggttcaagggtcgaccaggatcaaagggatcaccgggacag
actggaagtcctggcttgtatggtgataatggcttcaagggcatgaaaggaggtgttggt
aaccctggaaatccttcctttcctggacctaaaggtttccctggaccccgtggtgacaag
ggaacagtgggtctgtcgggttcaataggtcgccccggtggggaaggcgcaccaggtact
ccagggcttcctgggcgacctggtatgtttggcgccctcggtgaggacggtcagtctggc
tccactggaccggctggcttccccggagatgaaggaccacaaggaccaaagggagatttc
ggcaacagaggattgccaggccaggacggttaccgtggtttcccaggactgaagggagac
aggggagatgcaggaggagatggactgccaggagatagggggctgaagggggctttaggg
ttcgggttccctggtagacctggtcaacagggaaggaacggggcacgtggactcccaggt
cttgaaggttcgcaaggtatcccaggagagaggggacagttcggcggagtgggaagcacc
ggtgacaaaggcttagatggcttaagtggcataccaggccctcagggccaactcggcgaa
ccagggttccctggccgtgctggaagacccggtacatttggcttccgcggtgcatttggt
gatatcggctttgatggattcaacggtccaaaaggacagaaaggtaacccaggcttccca
agtttccctgggccgcgcggaagcccaggccccaggggccaacctggagaagatggacca
ctaggccagccaggtgagcctggtgaggtcggaagtgtaggattcccaggtcggtttggt
gagccaggagacgtcggtaactttggcgatccaggggaggatggtgaagatggactcctt
ggtcctctcggcctcgacggaagaccaggggagccaggattccccggccaggttggagat
cagggattcaacggtaacccgggtatgattggtgagcctggcatgcctggaatgaacgga
ctaccgggtgccctcggtggacctggccgtcctggaatgaaaggaactagtggaccgagt
ggattcagaggaacatccggacttccgggtgatcaaggattaattggaagaccaggccca
caaggtcctattggcccccagggtatcgacggtatccagggtcaaccaggacgtaatggc
tttgatggaaatcgtggctttccgggagagcagggtccggccggtgagcaaggaccgaaa
ggagatccctttacccctaatgaactgaccgaacctcgacctccaggaccgaagggtgaa
aagggacccaaaggagaacccggacgcattggaaatccgggacttcccggactgactgga
gaccgtggacctgtgggagagcaaggaggaggaggatacgacggctacagtggattcacc
ggtgctccaggcgcaagaggagaccagggtcttcctgggttgtttggcctcgaaggaccc
aagggaatgtcgggtatggatggtatccctggaggtgaaggaaggcagggtctaccagga
cccgatggtccatcgggagcaccaggtttcccgggtttctctggcttcccgggcaggaag
ggtactcctggtcgcccaggacccagaggtctcccaggcatcaaaggtttcccaggtatt
cagggtgaaaacggaatccctgccttcgtcgctccacaaggagagcctggaatggatgga
gaatccggcccagatggattgccaggtccgaatggcaaccggggccgtcctggattccct
ggcctgaacggactgaagggagatagaggagatattggaccttctggtccaaggcgacct
cctgttattggactcaagggagtcgatggtgaaccgggtcgggcgggacgccaaggacca
aaggggagagcaggtgatattggtttagttggggagattggtgaatctggatccgttgga
ctcaaaggatacaatggcttcgatggaagagatggtcgaccaggtctgatgggcatgaga
ggttctaagggtctacctggggatgaatcgaacgcccagaagggtgtaaagggcaacatt
ggagacgtcggtagctatggtgtccctggacgtccaggccgccccggcctacctggacag
gatggattcaatggtctccctggattgaagggtgatattggagatcaaggtgtgcctgga
caagtaggtctaaacggccccccaggacccgggggaccgcgaggagactttggagattct
ggatcacaaggggagaatggagacaagggcgtgggcggcggtgttggcttaccaggagct
cctcctagaccccagggcttcatcgtcgtcagacacagccagtctagaaatgttcctcaa
tgttcggccggcatgacgacactatggagtggatacagtctgctgtacactgaaggcaac
gagagagcccaacaccaagatctaggtctggccgggtcttgcctgccccgattcagcact
atgccctacatcttctgcaacttcaacgaggtatgcaactacgcccagcgtaacgacaag
tcattctggctggccacgtcggaggctatcccgatgatgccagtttcgggtaatgggatc
agacccttcatcagtcgttgcacggtgtgcgagacgccgtcacagatcatcgctgtgcat
agtcaggataccacgctaccggactgcccgcagaactggagatcattgtggattggattc
agttttgcaatgtacacatctgcaggagccgatggtggtggctcaccacttgccagtccc
ggttcctgcctagagagcttccgcgccacgcccttcatcgagtgcaacgggcggggcaat
tgcttcttctaccgcaacacctacagcttctggatgaccacggtcgatgcccaggagatg
ttccaacggcagcggccccaaacccttaaggccggctcgctgcgtacccgcgtcagtcgc
tgccaagtatgtcaaaagcaaatgtaa
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