Luidia clathrata (European starfish): 117298859
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Entry
117298859 CDS
T10152
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03008
Ribosome biogenesis in eukaryotes
arun03013
Nucleocytoplasmic transport
arun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117298859
03015 mRNA surveillance pathway
117298859
03008 Ribosome biogenesis in eukaryotes
117298859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117298859
03009 Ribosome biogenesis [BR:
arun03009
]
117298859
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117298859
mRNA cycle factors
Stress granule specific factors
117298859
Ribosome biogenesis [BR:
arun03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
117298859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_9
Zn_peptidase_2
Motif
Other DBs
NCBI-GeneID:
117298859
NCBI-ProteinID:
XP_033638109
LinkDB
All DBs
Position
1:18553583..18572339
Genome browser
AA seq
713 aa
AA seq
DB search
MSRGNNRKDNFRSGSGGGRDGGGRSQQFYGHDDRAQDDRRRDDGGNSNWRGGHSGSDGDN
WRGGRGRRGGRGASSNRGGGRDNGGGGGSGGGSYGGKWRGGKGPRRGRGGGGGGGNDGGN
NQGPNPRSRLQDDDGDVMMGDHDAGPSQRFNPYGRSNNNRRGGNRGRDRDNRSGSQNRSD
GGSMSRLGLPINQGSRGGSGSRQSGRGKGALTWSKITIPHGRKVEKDWLLRSLQNICRVP
FIPLEFHLEGEMAVFYVDDIETGNALRSLSGRITSKTGHKIIVVCRPSRPPNNKLDEDSV
EAMKVCLSDRYDPSTKSLNLSQLIQDQGLKSKGVNNVLNRPQVMETVVMIISENIPEVLS
IDLSNNKLYSLTIFSKLAEKATSLRSLNLAKNVMRGEADLENIKDFPLEDLILEDNPIVQ
RSNYTSIVRRCFPKMMRLDGKELPPPITFDLETPTVLPPVQHSFFGNEAIKKILDKFISQ
YFTVFDSGDRQQFIEIYHEQSCFSLTTQAVSGGPSYLKKYFSISRNLLRIKEPSQELRLF
KHTKLSVVAFLNEMSPTLHDTNSFQVDLSLAQGNLVSFTVHGIFKEFNTSRSTSQLISFS
RTFLAVMQPPTLCIINDHLSIRNPTQAQQKAAFISPAPTPTPSPVRVPPEAAHIASTLTS
QHQEMIASFMKDSKMNIQFSTQCLSENNWDYSKAGEQFTKLHAEGKIPAEAFK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaggtaataatcgtaaagataattttagatctgggagtggtggtggcagagat
ggtggtggtcggagtcagcagttttacggtcatgacgatcgggctcaagatgacaggcga
cgagacgatggtggaaattcaaactggaggggaggtcactcggggtcagacggtgacaat
tggagaggaggaagaggcaggagaggcggaagaggagcgtcatcaaacagaggcgggggt
agagataacggtggtggtggaggaagtggcggagggagttatggggggaaatggcgagga
gggaagggtccaagaagaggaagaggaggaggaggcggaggagggaatgatggaggaaac
aaccaaggtcccaatcctcgctccagactacaagatgatgatggggatgtcatgatggga
gatcatgatgctggacctagtcaaagattcaatccatatggacgctcaaacaacaacagg
agaggaggcaaccgtggtagagaccgagacaaccggagtggcagtcaaaatagatcggat
ggtggatccatgtccagactaggtcttccaatcaatcagggaagcagaggaggctctggt
agtcgtcaaagtggacgaggcaaaggggccttgacatggtctaagatcacgataccacat
ggaaggaaagttgagaaggattggttgctgagatcgttgcagaacatttgtagagtcccc
tttatacctctggagtttcatcttgaaggagagatggcggtgttctacgtcgatgacatt
gaaacaggaaatgctcttcggagtctcagcggaagaatcacctcaaagacgggacataag
attatcgtggtgtgtaggccgagtagacctcctaataacaagctagatgaggactctgtt
gaagcaatgaaggtttgcttgagtgatcgctacgacccatccaccaaatcacttaatctc
agtcaactaatacaagatcaaggtcttaaaagtaaaggagtcaataatgtgctcaatcga
cctcaggtcatggaaacagtagttatgatcatttcagagaatataccagaggttctgtcc
atagatctcagtaacaacaaactctacagcttaaccatattttccaagttggccgagaaa
gctaccagtttacgaagtttaaaccttgctaagaacgtgatgcgtggtgaagccgatcta
gagaacatcaaggatttccccctggaggatttgattctggaagataatccgatagttcag
aggtccaactacaccagtattgttcgaagatgtttccccaagatgatgagactagatggt
aaagagctcccgcctcctatcacgtttgacttagaaacgccaacagtcctcccaccggtt
caacacagcttctttggcaacgaggccatcaagaaaattctggataaattcataagccaa
tatttcacagtgtttgattctggagacaggcaacagttcattgagatttaccatgagcag
tcctgtttctcattgactactcaagctgtttctggcgggccctcctacttgaagaaatac
ttttcaataagccgcaatctcctcagaataaaagagccaagtcaggaactgaggctattc
aagcataccaagctatcggttgtcgcctttttgaatgagatgtctccgacgctgcatgac
accaactcgttccaggttgatctatcccttgctcagggtaatcttgtgagctttaccgtg
catgggatcttcaaagaattcaacaccagtaggtccacctcccagttgatatcgttcagt
cgcacctttctagctgtaatgcaaccaccgacgttatgtatcatcaacgatcatctgtca
atcaggaatcccacacaggctcagcagaaggctgcgtttatttcccctgctcctactcca
actccaagcccagtgagggtacctccagaggccgcgcacattgccagcaccttgacgtca
cagcatcaagaaatgatcgccagtttcatgaaagattccaaaatgaatattcagttttca
acacaatgtttatccgagaataattgggattacagtaaagctggggagcagttcaccaaa
ctacatgctgaaggcaagataccagcagaagccttcaagtga
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