Luidia clathrata (European starfish): 117298934
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Entry
117298934 CDS
T10152
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03020
RNA polymerase
arun03420
Nucleotide excision repair
Brite
Enzymes [BR:
arun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117298934
Transcription machinery [BR:
arun03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117298934
DNA repair and recombination proteins [BR:
arun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117298934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
117298934
NCBI-ProteinID:
XP_033638208
LinkDB
All DBs
Position
13:8782818..8813523
Genome browser
AA seq
1926 aa
AA seq
DB search
MSLQFHDSKAPMRDVRRVQFGVLSPHEIKRMSVVEGGIRYAEVMEGGKPKLGGLMDPRQG
CVDRQSRCQTCACNQVDCPGHFGHIELSKPVFHPGFLTKSVKVLRCVCFFCSKLLVDQSH
PKVKEILSKSKGYPRKRLAHVYDLCRGKKMCEGGEEMDQTFNADLAKREGETPEPRAQGH
GGCGRYQPQIRRTGLDLTAEWKHVNEDTQERKINLTAERVHEIFKRISDEESNILGMDQK
YTRPDWMIVTVLPVPPLCVRPAVVMFGSARNQDDLTHKLADIIKANNQLQKNEQNGAAAH
IIAEDTRMLQFHVATLTDNELPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDF
SARAVITPDPNLSIDQVGVPRTIASNLTYPEIVTPFNIDKLQELVRIGHNQYPGAKYIIR
DNGERVDLRFHPKTSDLHLQCGYRVERHLRDDDVVIFNRQPTLHKMSMMGHRVKILHWST
FRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVTEIMMVPRQMVTPQSNRPVMGIVQDS
LTATRKFTKRDVFLQKEELMNLLMWLPNWDGHIPQPAIIKPRPLWTGKQMMTLIIPSNIN
LVKTHSTHPDEEDKGPYKWISPGDTKVLIVNGELISGIVCKKTIGASGGSLGHVMFMEKG
HEITRDFYGNIQTVVNNWLLLEGHSIGIGDCIADAQTYEDIQNTIRNAKQEVIDVIEKAH
NDELEPTPGNTLRQTFENQVNRILNNARDKTGGSAQKSLSEFNNFKCMVVAGSKGSKINI
SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEMFFHAM
GGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTLRNSNDHLVQLRYGEDGLDGTKV
EFQNLPTLKPSHKAFDKRFKFDCTNERALRRQLNEDIVKDVVANAHVHLEIEKEFEQLKE
DREIMRKILPTGEAKVVLPCNLDRMIWNAQKIFHINTRHQTDLHPMKIVEGVRDLSKKLV
VVKGEDRISKQAQLNATMLFNMLLRSTLCAKRVIDEHHMTMESFDWLLGEIETRFNQALA
HPGEMAGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTV
FLVGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPKPENTVIVEDQDWVNLYYEMPD
FDPTRISPWLLRIELDRKRMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MSSDDAKFGEDEEQVDKMEDNVFLRCIESNILTDMTLQGIEQIAKVYMHLPQQDMKKRII
ITEEGEFKAIQEWLLETDGTSMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVERE
MNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFEETVDILMD
AAAHAEVDHLKGVSENIMLGKLAGVGTGSFALLLDAEKCKHGMEIPMGMGGGLGAMTGMF
FGSAASPSASMSPQMTPWNQGATPAYGVAWSPMGSGMTPGAAGFSPSAQSDASGFSPGYS
PAWSPQPGSPGSPGPVSPYIPSPASPMSPSYSPASPSYITGSPATPQSPGYSPTSPSYSP
SSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPT
SPSYSPTSPSFSAKSPSYSPTSPSYSPTSPSYSPTSPAGYSPQSPSYSPGSPSYSPSSPK
YSPSSPSYSSTSPGYSGASHFTPTSPEYSPTSPTYSPASPSYSPSSPKYSPSSPKNSPSS
PTYSPQTPKYSPTSPSYSPTSPQYSPGSPSYSPTSPQDTYSPMSPGYSPASPSYSPSSPD
IDGSDD
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttcaatttcatgattctaaagccccaatgcgtgatgtcaggagggtgcagttt
ggtgttctaagccctcatgaaattaaacgcatgtcggtcgttgagggcggcattcgctac
gcagaagtcatggagggcggaaaaccaaagctgggcggcctgatggaccctcggcaaggt
tgcgtcgaccgacagtcaagatgccagacttgtgcatgcaaccaagtggactgccctggg
cattttggacacatcgagctgtccaagcctgtgttccatccggggttcctgactaagtct
gtgaaggttttacgctgtgtctgctttttctgctccaaacttcttgttgaccagtcccac
cccaaagtgaaggagatcctgagtaaatcaaagggttacccccgaaagcgtctcgctcac
gtctacgatctctgcaggggaaagaagatgtgtgaaggaggtgaagaaatggaccagacc
ttcaatgctgacctcgctaagagggagggggagacaccagaacccagggcacagggccac
ggtggctgcggcagataccaaccgcagatccgacgaaccggcctggacctgactgccgaa
tggaagcacgtcaacgaagacacccaggagaggaagatcaacctcactgccgagcgcgtc
catgaaatcttcaagcgcatctcggacgaggagagtaacattctggggatggaccagaag
tacacccggccagactggatgatcgtcaccgtgctgccagtgcccccgctgtgtgtccga
ccggcagtggtcatgttcggctcagccagaaaccaggatgatctgacccacaaactggct
gacatcatcaaggccaacaaccagctgcagaagaatgagcagaatggtgctgcagcacac
atcatcgctgaagacacaaggatgttgcaatttcacgtggcaacgctaacagacaatgag
cttcctggacttccaagggcgatgcaaaagtcgggtcggccactcaagtccgtcaaacag
agactgaagagtaaagaggggcgtatccgcggtaacctgatgggtaagcgtgtggatttc
tccgcccgtgctgtcattactcccgatcccaacctctccatcgaccaggtgggcgtgccc
agaacaatcgcctcaaatctgacctatccagagattgtcacacccttcaacattgacaaa
ctacaggaactggtccgaatcggtcacaaccagtacccaggcgccaagtacatcatcaga
gacaacggggagcgtgtggacctcagattccaccccaagacgagtgatcttcacctgcag
tgtggctacagggtggagcgtcatctgcgcgacgacgacgtagtcatcttcaacagacag
ccaacccttcacaaaatgtccatgatgggtcacagagtcaagattcttcactggtcaacg
tttcgcctcaatctcagtgtaacaactccctacaacgctgactttgacggtgacgagatg
aacctccacgttccccagtccatggagacgagggcagaggtcaccgagatcatgatggta
ccccgtcagatggtaaccccacagtctaaccgacccgtcatgggtattgtgcaggactcg
ctcacggcgacgaggaaattcaccaaacgtgacgtctttttgcagaaggaagagctgatg
aacctcctgatgtggctcccaaactgggacggccacatcccccagccggccatcatcaag
ccccgccccctctggactggcaagcagatgatgacgctcatcatcccgtccaatatcaac
ctcgtcaaaactcacagcacccatcccgatgaggaggataaggggccttacaagtggatc
tccccaggagacactaaggtgcttattgtgaacggggaactcatctcgggcatcgtctgc
aagaagacgatcggtgcgtcgggaggttcactcggccacgtcatgttcatggagaaggga
cacgagatcaccagagacttctacggcaacattcagactgtcgtcaacaactggctccta
ctggagggtcacagtatcggtatcggtgactgtatcgccgatgcgcagacctacgaggac
atccagaatacgatccgcaacgctaagcaagaagtgattgacgtcattgagaaagctcac
aatgacgaactggaacccaccccaggaaatacactcagacagacatttgagaaccaggtg
aatcgtattctgaacaacgctcgtgacaagaccggaggcagcgctcagaagagcttgtct
gaattcaacaacttcaagtgcatggtggtagctggatccaaggggtctaaaatcaacatc
tcacaggtcattgcgtgtgtgggtcaacagaacgtggagggaaagcgtatcccgtttggt
ttccgccatcgtaccctgccccatttcattaaggacgattacggcccggagagtcgaggc
ttcgtggagaactcctaccttgccgggttgaccccgtccgagatgttcttccacgccatg
ggtggccgagagggacttattgatactgccgtcaagactgctgaaactggttacatccag
cggcgtctcatcaaggctatggagagcgtcatggtacgttacgacggtaccctgcgcaac
agcaacgaccacctggtgcagcttcggtacggagaggacggactagacggcaccaaggtg
gagttccagaacctacccacgctcaaaccctctcacaaggcgttcgataagcgcttcaag
tttgactgcactaacgagagagctctgcgccgccagctgaatgaggacatcgtcaaggat
gttgtcgccaacgctcacgtccacctcgagatcgagaaagagtttgagcagctgaaagag
gatcgggagatcatgaggaagatcttgcccactggtgaagcaaaggtggttttgccatgt
aacctggaccgcatgatctggaatgcccagaagattttccacatcaacacacgccaccag
acggacctgcaccccatgaaaattgttgaaggggttcgcgatctgtccaagaagttggtc
gtcgtcaaaggcgaggataggatcagtaaacaggctcagttgaacgccactatgctgttc
aacatgctcctgcgttctacgctctgcgcaaaacgcgtcatcgacgaacaccacatgacc
atggagtcgttcgattggctgttgggagagatcgagacaagattcaaccaggccttggcg
catcccggcgagatggcaggtccgctagctgcccagtctctcggcgagcccgccacccag
atgaccctaaacacctttcactacgccggtgtgtctgctaagaacgtcaccctgggtgta
ccccgcctcaaggagatcatcaacatctccaagaaacccaagacgccctcgctgactgtc
ttcctcgtcggccaggctgcaagggacgctgaacgagccaaggatatcctttgtcgtctc
gagcacacaaccctccgcaaggtgacggcgaacaccgccatctactacgaccccaagcct
gagaacaccgtcatcgtggaggatcaggactgggtcaacctctactacgagatgcccgac
tttgaccccacccgtatctccccgtggctgctccgcatcgagctcgaccgcaagcgcatg
actgaccgaaaactgaccatggagcaaatcgctgagaagatcaacgctgggtttggtgac
gatctcaactgcatcttcaacgacgataatgcggagaagctggtgctgcgcatcagaatc
atgagcagtgacgacgctaaatttggagaggatgaggagcaagtggacaagatggaggac
aacgtcttcctccgttgcatcgagtccaacatcttgacagacatgacgctgcaaggcatt
gagcaaattgctaaggtgtacatgcatctgcctcagcaagacatgaagaaacgcatcatc
atcacggaggagggagagttcaaagccattcaagaatggctcttggagacggacggcacc
agcatgatgaaggtccttagtgacccagaggtcgacccggtccgaaccttctccaacgac
atctgtgagattttccaggtgctcggtatcgaagcggtccgcaagtcagtggagcgtgag
atgaaccacgtgatctcctttgacggctcctacgttaactaccgccatcttgccttgctt
tgtgacgtcatgactgcaaggggtcatcttatggctattacgcgtcacggtatcaacaga
caagatgtgggcgccctcatgaggtgctcctttgaggaaacggtggatatcttaatggac
gccgcagcccacgccgaggtggaccacctcaagggtgtctcagagaacatcatgctgggc
aagctagctggcgtaggcactgggtcattcgccttgctgctggatgcagagaagtgcaaa
cacggcatggaaataccaatgggaatgggcggaggactaggtgcgatgactgggatgttc
ttcggatcagcggcatcaccgtcggccagtatgtccccacagatgaccccctggaaccaa
ggggcaaccccagcctatggagtcgcctggtcaccaatgggaagtggaatgacacccggt
gctgctggcttcagtccttcagctcaatcagacgcaagtgggttcagcccaggctacagc
cctgcctggtccccccagccaggctccccaggatcccctggaccggtcagcccctacatc
ccatctccagccagcccaatgtctccgagctattccccagcgtcgccatcgtacatcact
ggctcgcctgcgacaccacagagccctggctactcgccaacaagtccctcctactcaccg
tcgagtcctggctactcgccgaccagcccgagttactcgccgaccagtcccagctactct
ccaacgagtcctagctactcgccaacaagtcccagctactcgccaacgagccctagctac
tccccaaccagtccgagctacagtccgaccagcccaagttacagcccgacgtcaccgagt
tatagccctacgtcaccaagttactcaccaacgagtccgtcatacagtccgacctcgccc
agctattccccaacctcccctagctacagcccaacttcaccaagttacagccccacctcg
ccaagttactcgccaaccagtccaagttactcgccgagctctccgaagtactcgcctacg
agtccgagctattcaccaacaagtccgagcttctctgccaagtcccccagctacagtccc
acatcaccaagttattcccccacatcgcccagttacagccccacctcccctgctgggtac
tcccctcagtcgcccagttactctcccggttcgcccagttactccccctcaagccccaag
tactccccgtccagcccgtcatacagctcgacctccccgggttacagtggggcatcccac
ttcaccccgacctcgccagagtacagcccaacgagccccacttattcccctgccagtccc
agctactccccatccagccccaagtactctccatcgagtcccaagaattccccatccagc
ccgacctactctccgcagacgcccaagtacagcccaacgtccccctcctactccccaacg
agtccccagtacagtccgggctcaccctcatactccccaaccagtccgcaagacacctac
tctccaatgtcgcccggttactccccagcttcaccctcatatagcccaagtagcccagat
attgatggctcagatgattaa
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