Luidia clathrata (European starfish): 117299931
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Entry
117299931 CDS
T10152
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117299931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arun03041
]
117299931
Enzymes [BR:
arun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117299931
Spliceosome [BR:
arun03041
]
Complex C
Other components
Step II factors
117299931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
PhoH
AAA_30
nSTAND_NTPase5
AAA_16
Sigma54_activ_2
ATPase
Motif
Other DBs
NCBI-GeneID:
117299931
NCBI-ProteinID:
XP_033639427
LinkDB
All DBs
Position
15:8860711..8896490
Genome browser
AA seq
1233 aa
AA seq
DB search
MDELAKLEYLSLVSKVCTELDNHLGMNDKDLAEFIIDIADKNPDYDSFNSALQKNGADLP
GSFVSNLQRLIHHMRPPKPKKSSLGAKVKKSKSVKVEKRREKYPGLCIPDEKMVEAEMDE
KVAMEAMDELEALMPAAISSIPIKTEKTEDVKSHKKKKSRHRHHSDSRSRSRSRSRERHR
DRHGDRQADRYADRHSDRHGDRQSDRHGDRHKHRRSSRSRSRSLDRDQRHRSRSNSRDRK
HKRKRDRSRDRDQEKYDDSDSHADRFVNRPPSMDPEVGSIYEGKVTSVMQYGCFVQLEGL
KRRCEGLVHISELRREGRVADVNDVVTRGMRVKAKVLSLAGTKIRLSMKDVDQDSGRDLN
PGLSKGLAGSSNPEADDTMRNPDRPSNLPLVTVAETDDSSIRKRVQRVTSPEKWELKQMM
AASCIDVTELPDFDETTGVLAKEDDSDEEIEIELREEDPPFLRGHGRQSVELSPVRIVKN
PDGTLSKAAMMQSALAKERREMKQTLDRAESENIPTGMNKNWIDPMPDSERALVANVRNM
GFTNQDMPEWKKSAFGGNKASYGKRTKMTIMEQRESLPIYKLKEQLVQAIIENQILVVIG
ETGSGKTTQMTQYLAEAGYTVRGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRF
EDCTSPETKIKYMTEGMLLRECLIDFDLQQYAIIMLDEAHERTIHTDVLFGLLKKAVKKR
SDLKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEILYTKEPEADYLDASLITVMQIH
LTEPPGDILLFLTGQEEIDTACEILFERMKSLGPEVPELIILPVYSALPSEMQTRIFDPA
PPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDQLVVTPISQAQAKQRA
GRAGRTGPGKCYRLYTERAYRDEMLTTAVPEIQRTNLASTLLALKAMGINDLLAFDFMDA
PPTETLITAMEQLHSLSALDDEGLLTRLGRRMAEFPLEPMLSKVLIMSVTLGCSEEILTI
VSMLSVQNVFYRPKDKQAIADQRKAKFQQAEGDHLTLLAVYNSWKNNKFSNPWCFENFVQ
ARTLRRAQDVRKQLLGIMDRHKLDVITCGKNTARVQKAICSGFFRSAAKKDPQEGYRTLV
DSQIVYIHPSSALFNRQPDWVVYHELVLTTKEYMREVTTIDPKWLVEFASSFFRVSDPTK
LSKHKKQQRLEPLYNKYEEPNSWRISRQRLRRN
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacttgcaaagttggagtatctgtcgctcgtgtccaaagtttgcactgaactg
gacaaccatttaggaatgaatgacaaagatcttgctgaattcatcattgatatcgccgac
aagaacccagactacgacagtttcaattcagcactacagaagaatggtgccgatctacca
gggtcgttcgtctccaaccttcaacgtcttatccaccacatgaggccaccgaagccgaag
aaatctagccttggcgctaaggtgaagaaatccaaatcggtcaaggtggagaagagacga
gaaaagtacccaggactctgtattcctgatgaaaaaatggttgaagctgagatggatgag
aaggtcgccatggaagccatggatgagcttgaagccttgatgccagctgctatcagctca
ataccaattaaaacggagaaaaccgaggacgtgaaatcacacaagaaaaagaagagccgc
catcgtcaccatagtgacagtcgaagcaggagcagaagtcgaagtcgtgaaagacacagg
gatagacacggtgatagacaagctgatagatacgctgacagacacagtgatcgacacggt
gacagacagagtgataggcacggtgacagacataaacataggaggagctcaaggtcaagg
tcaaggagcttggaccgagatcagcgccaccgtagtcggagcaacagcagggatcggaaa
cacaagaggaaacgagacagaagccgagatcgagatcaggaaaaatacgacgacagcgac
agccatgccgaccgctttgtaaaccgcccgccctcgatggacccggaagttgggagtata
tatgaggggaaagtaacgagtgtgatgcagtatggatgttttgtacagctggagggctta
aagcgcagatgcgaaggacttgtccatatatcagagctccgtcgtgaaggtcgtgttgcc
gatgttaacgatgtggtgactcgaggtatgagagtcaaggctaaggttctctccctcgct
gggaccaagatccgactctccatgaaggatgtcgaccaagactcaggtagagaccttaat
ccaggattatctaaaggattagcaggttcatctaatccagaagctgatgatacaatgcgt
aatccagatcgtccatcgaacctccctcttgtgaccgtagcggaaacggacgacagtagc
atcaggaagcgtgtacagcgtgttacgtctcccgaaaaatgggaactgaaacagatgatg
gcagcaagctgcatcgatgtgacagagcttcctgattttgatgagacgaccggagtccta
gctaaggaggacgattctgatgaggagattgagatcgagcttcgggaagaggaccctccc
ttcctacgagggcacggacggcagagtgttgaactcagcccagtcagaatagttaagaat
cccgacggaacgttgtccaaggcagccatgatgcagagcgccctcgctaaggagcgcagg
gagatgaaacaaacgctggacagagcggagagcgaaaatatcccgacaggcatgaacaag
aattggatcgaccctatgccagacagtgagagagcattggtggccaatgtccgtaacatg
ggcttcaccaaccaggacatgccggagtggaagaagagtgcgtttgggggaaataaagcg
tcttacggaaaacgcaccaagatgaccattatggagcagagggaaagcttgcctatctat
aaactcaaggagcaattggtgcaggctattatagaaaaccagatcctggtggttatcgga
gaaacgggtagcggtaaaaccacccagatgacccagtacttagcagaggctgggtatact
gtacgtgggaagatcggatgtacccagccccgtcgtgtggctgccatgtccgttgccaag
agggtgtctgaagagttcggttgccggttagggcaagaggttggctacaccattcgtttc
gaggactgcacctccccggagaccaaaatcaagtacatgacagaaggtatgcttctacga
gagtgcctgattgactttgacctccagcagtacgccatcatcatgttggacgaagcccac
gagaggaccatccacaccgacgtcttgttcgggctcctgaagaaggccgtcaagaaacgt
agcgatctgaagctcatcgtgacatcggcgacgctggacgccgttaagttctcccagtac
ttctttgaagcgccgatcttcacaattcctggccgtacttttcccgttgagatcctttac
accaaggaaccagaggcagattatctggacgcttcactcatcaccgtcatgcagattcat
ctgactgaaccaccgggtgatatccttctgttcttgacgggtcaggaggagatcgacacg
gcttgcgagatcctctttgagaggatgaagtctcttggccctgaggtccctgagctgatc
atcctcccggtttactctgccctgcctagtgagatgcagacgagaatctttgaccccgcc
cctcctggcagcagaaaggttgtcatagcaaccaacattgccgagacatctcttaccatt
gatggaatctactacgttgtggaccccggctttgtcaaacagaaagtctacaattctaag
acggggatggaccaacttgttgttacacccatatcacaggctcaagctaaacaacgtgca
ggtcgtgccgggcgcaccggtccagggaaatgttaccgtctctacaccgagcgtgcctac
cgagacgaaatgcttacaacggccgtccccgagatccaacggactaacctggccagcaca
ctcctcgctctcaaagcaatggggataaacgatctactggcgtttgactttatggacgca
cctccgacggaaacactgatcacggccatggagcagttgcattcattgagtgctctcgat
gatgagggtctgttgactagacttggacgtaggatggcagagttcccattggaaccgatg
ttgtccaaggttctgatcatgtccgtcactcttggctgcagtgaggagattcttaccatt
gtgtctatgctgtccgttcaaaacgtcttctacagacccaaggacaagcaagcgattgcc
gaccagcgtaaagctaagttccagcaagctgagggggaccatctgaccctcctagccgtc
tataattcctggaagaacaacaagttctccaacccttggtgctttgagaattttgtccag
gcgcggactctccgtcgagcgcaggacgtccggaaacaactgctcggaataatggacaga
cataaattagacgtcattacctgtggaaagaacaccgcccgtgtgcagaaggccatttgc
agcggtttcttcagaagcgcggccaaaaaggatccacaggaggggtatcggactctagtt
gacagtcaaattgtgtacattcatccatccagtgctctcttcaaccggcaaccagactgg
gtcgtctaccatgagctcgtcttgacaaccaaggagtacatgagagaagtcactaccatc
gaccccaagtggctggtggagtttgcctcgtccttcttccgggtgtcagacccaaccaag
ttgagcaagcacaagaagcagcaacgtctggagccgctgtataataaatacgaagagcct
aactcatggagaatctcaagacagaggctgcgccgaaactag
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integrated database retrieval system
