Luidia clathrata (European starfish): 117300008
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Entry
117300008 CDS
T10152
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03040
Spliceosome
Brite
Enzymes [BR:
arun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117300008
Spliceosome [BR:
arun03041
]
Complex C
Other components
Step II factors
117300008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Helicase_C
IBR
OB_NTP_bind
KH_DEAH11
DEAD
zf-RING_11
RBD_DEAH11
HA2_N
HA2_C
IBR_1
zf-RING_2
AAA_22
AAA_19
DMP12
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
117300008
NCBI-ProteinID:
XP_033639547
LinkDB
All DBs
Position
15:complement(1091838..1106281)
Genome browser
AA seq
2733 aa
AA seq
DB search
MMASREHFPIISSSDCDNMGEDDLMVFSDSIESSEETSSEEETDADEEEGEEEEEEEEVG
GGGLGKDLPKEDREGSMGKTNVSAAMKVMQDSSSNAARQTTSTRLKLQVQVKNICTDQDS
FKTFLGCLNVTNYQNIDWSMKDSQNSQASILFKNQEDAAAAQGILNNCSIGASDRKLSAF
LQDQRSRRPRQNKNGKTSSAVHGNNPHQNKVHPDGQSPSYDQRQRHQQGHRNHDQYSHQE
SDQHPSSDRGNYQGHPRDGYTPDDRHRPSDMAVDHRSSQTGRGNSSGRGNYRGHPRFGYT
PDDRHRPSDMAYDHQSSQTGRGNSSGRGNYRGHPRGAYTPDDRHRPSDMAVDHRSSQTGR
GNSSGRGNYRGHPRGGYTPDDRHRPSDMAVDHRSSQTGRGNSSGRGNYRGHPRSGYTPDD
RHRPSDMAYDHQSSQTGRGNSSGRGNYRGHPRGAYTPDDHHRPSDMAVDHRSSQTGQGNS
SGRGNYRGYPRGGYTPDDRHRPLDMAYDHQTSQTGRGNSSGRGNYRGNYRGHHRGGYTPD
NHPGPSRQDPYMAYDPQSSQTGCGDSSGRGKYQGHERGGYTTGDRRPSLTHSEQDVQLRA
DQSQHPIGAPRQPQASEKNIPSLMSMPLAPNIPYDRDDDQSSIASGMSERSGTSSQPISL
HVKNIDDGVSNDGFCRFLSDKKISFSDVDFFISKSGRRFAIIHFASVTDTNMAQSFLHNR
WIFRGGPEMCVSYSHRKAMASPSGDLHPPSFEATGYPEGATRGSHEGRGQGYRGRGCRNR
GESSRRGRSRGGRGLGGRGRGRRTRNWRQKMGEDSDNQSECSEVRSICSTVVSHASSSQV
KQSSSLWVTNIGENFDLAEFYDFLESLDLNCQCSGLKPSQKHNNQFAVLQFPDLKMATAA
FGVLNNDLWRLGNDTPIKASFPVSKESYRNKKSGLSLHVEQLGHGPDEGRVNVERWLEDA
QQTKDLKEESQRGYRHTEREQEQKGGRGQGRNGRGHRGKGSSVGDVRSQLRSGDKTDESN
DGDKGTTGGLVRSKYKPCTDKDNTQERSPNEVVLTDLPRNISESDVVYLVREECHGFVDA
VLASGRCSLKFKRREDAMEAVCKLYGKPISGHCIKPVLSWHNEEVEPHIAKKVLKDLKER
EMPEKVHDINYKITEECKVINSDLSDCRDAFKENLSFAEIHRYKISIETHEHHLEEKQRF
LDEFNNACLNIETALEGLESETQTLSEVHKIRHQFLRECRRLDSPLPVYGYRSRIEEAMR
WNKAVVLQGETGSGKSTQIPQYLVDMALESQEDEGSSQRPQWRVVCTQPRRVAALTLSKR
VAEEYGCQVSEEVGYFVGNKKSVSAKTVVTFMTDRKLLNLIIADPNLSDYTCVIVDEAHE
RSVDTDILLATLKKLLRSRKDLHLLIMSATIDTTLFSNYLDECKEIKVPGRTFPVDKRWI
GDDVSIGEGDYVGKAVKQTAKVHRDEKEGDILVFLTSANEIEQACRDLSTSLGQRPDDQD
KEALILPLHGRLQPEDQMKVFADAKAGQRKIIFATNVAETSVTIKGIRYVIDTGVVKECQ
YDPKRSMSLLKVTAITQASAQQRAGRAGRTGPGVCYRLYTKEEYKDLNEMMKPEILRVHL
GMAALQLLELGVEDVANFDFIQAPDREATQQAMTTLRLLGAVDAANKLTSLGRKMATFPM
EPRLSKVILEGVEKHLTSEAVIIAALISAPGSLFYRGGSDKDKEKADRLKLKYCHDSGDV
ITMLKAYGSWNSKAAAKQKAWCMENSMNSKTLRAVRESANEAAQVLKLKHNIECNARDYK
MEAIDAAKTESLQKIIMSAYFQTLSLYNGHPRAGYTVLPHQKSGFIHPSSSLVALDCNPK
WVVYEEFKQTSRSFLFNVTRVNIDWLQEVAPMFYDEIDVGALQEMALQEAPAIQLGTAVM
RRLTIKRNEKVRAMEEYITEVKGSPCIIQVNRATKKLQMFVKMNICEFATSYVERLLKEE
LESIQREQIEVPVGESGVVRQVVVAGGQTKFILMPNDYRSLEVSNVTGDMSEDDLKMICL
SSCCTQNEILDVYKFQKQTTAKWGRITFSSPKTAEETKMLLEVEDTLQLEPILGRSFQNR
DIARVSSRIVVIWYTWPSKGQAFINFDTSNQALEMKESLQNFDFKGKLLECQLKKNNTRA
LYLRNVHTDATNEELEEAIEDYTDCKKVKCSIARQPPAILIKDDQVTQDIYKMFEGTLRE
DQLDINILSARSEKTQSRKAIANFECDNEDEVDGCILNIQDNPPRNSAGQIYIVKLTASC
MLFCNPDVYKCIEQRITKLVEEVSEGVRNLNVRVSKSKKTNDWVINVAGENIQEVHRTRR
ELLSYIRGETVSLNDLCEEEVSFQIKYHILKLLHKNGLRHLTYGLEAHAMVDTRRHLIVI
YGKDEVREVLKEQVKNYINIICKNQLKEISLTAGLSEGCTKGRAVRALVKAYGPWLKKLV
EETGAKAITLNMCQGNLLIEGNQNVFDNVHKMVRNCLQEAGQQAAIRVGGDDATTEVECG
ICYTAVEATEEMYRLSACSHGFHLQCLHEMFTVRLQNASKDYPIECPCDGCGLPMLLCDF
RVLCSDETKRRRLFDLALESHVTQKSEGKLKFCPTPDCHMIYKTTKDVGVFSCQECRNRL
CSSCGSEPHMGYTCEEFKAYGKDCSDVAFQKWIQGKDVKKCPCGIYIEKIEGCFHMTCSE
CKKHLCWLCLAIFDTSDLCYAHLSQMHGGCFQY
NT seq
8202 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttcaagggaacattttccaatcatttcatcttctgattgtgataatatggga
gaagatgatctgatggtgttcagtgactctattgagtcctcggaggaaacaagtagtgaa
gaagagaccgatgcagatgaggaggagggggaggaggaggaggaggaggaggaagttggg
ggaggtggtctgggtaaagatttacccaaagaagacagagagggaagcatgggaaagaca
aatgtttcagctgcgatgaaggtgatgcaagattcatcttccaatgctgcaagacaaaca
acatcaacgagattgaagttacaagtacaggtgaaaaatatatgcactgaccaagactca
ttcaaaacttttctgggctgcttaaacgtcacaaattatcaaaatatagactggtcgatg
aaggattcacagaacagccaagctagcattctgtttaaaaatcaagaagatgctgctgca
gcacaggggattctcaataattgctcaatcggagcatctgacaggaaactgtcagctttt
ttacaagaccaaagatcgcgtcgtcccagacaaaacaaaaatggaaaaacatcctcagct
gttcatggaaacaatccacaccagaacaaggttcatcctgatggtcagtctccttcatat
gaccaacgccagagacatcaacaaggtcaccgtaatcatgaccaatattctcatcaagaa
agtgaccagcatccatcttctgaccgaggaaactatcaaggtcaccctagagatggatac
acaccagatgaccgccaccgaccttcagacatggcagttgaccatcgatcttcacagact
ggccggggtaattcctctgggcgaggaaactatcgaggacaccctagatttggttacaca
ccagatgaccgccaccgaccttcagacatggcatatgaccatcaatcttcacagactggc
cgcggtaattcctctgggcgaggaaactatcgaggtcaccctagaggtgcttacacacca
gatgaccgccaccgaccttcggacatggcagttgaccatcgatcttcacagactggccgg
ggtaattcctctgggcgaggaaactatcgaggtcacccgagaggtggttacacaccagat
gaccgccaccgaccttcggacatggcagttgaccatcgatcttcacagactggccggggt
aattcctctgggcgaggaaactatcgaggacaccctagatctggttacacaccagatgac
cgccaccgaccttcggacatggcatatgaccatcaatcttcacagactggccggggtaat
tcctctgggcgaggaaactatcgaggtcaccctagaggtgcttacacaccagatgaccac
caccgaccttcagacatggcagttgaccatcgatcttcacagactggccagggtaattcc
tctgggcgaggaaactatcgaggttacccgagaggtggttacacaccagatgaccgccac
cgacctttggacatggcatatgaccatcaaacttcacagactggccggggtaattcctct
gggcgaggaaactatcgaggaaactatcgaggacaccatagaggtggttacacgccagat
aatcatcccggaccctcgcgccaggatccatacatggcatatgaccctcaatcttcacag
actggctgtggtgattcctctgggcgaggcaaatatcaaggacacgaaagaggtggttat
acaacaggtgaccgccggcccagcctgacacattctgagcaagatgttcaactgagggct
gaccaaagccagcatccaatcggggcacctagacagccccaagcttctgaaaagaacatc
ccctcattgatgtcgatgcctcttgctccaaatattccttatgatagagatgatgaccag
agcagcattgcatcaggaatgagtgagaggagtggtacatcatcacagccaatctcatta
catgtgaaaaacatcgatgacggagtgagcaatgatggattttgtcgtttcttgtccgac
aaaaagatatcattctcagatgtagacttttttatttccaaatcagggaggcgatttgct
attatccattttgcatctgtcacggacacaaatatggctcaaagttttctgcataaccgc
tggatttttcggggtggccctgaaatgtgcgtaagctacagtcatcgaaaagctatggcg
agccccagtggagatttgcatcccccttcctttgaagcaactggataccctgaaggggca
actcgaggaagtcatgaagggaggggtcaaggctacagaggtcgaggatgtagaaatcga
ggagagagcagccgtagagggagaagccgtggagggagaggtcttggaggtagaggccgt
ggaaggaggacaagaaactggcgacagaaaatgggagaagattctgataatcaatcagaa
tgtagtgaagtgaggagcatctgctctactgtggtgagtcatgccagttcctctcaagtc
aaacagtcttcatctctctgggtaacaaatattggagagaatttcgatcttgcggaattc
tatgactttctggagtcccttgatttaaactgtcagtgctcggggttgaaaccttcccaa
aaacacaacaaccaatttgctgttcttcagtttccagatctcaagatggcaacagcagct
ttcggtgttttgaacaatgacctgtggcgtcttgggaatgacactccaattaaagccagt
ttcccagtatcaaaagagtcttaccgaaacaagaagtccggcctgtctcttcatgttgaa
caacttggtcacggtcctgatgagggtcgggtaaatgttgagagatggcttgaggacgcc
caacaaactaaagatttgaaagaggagagtcaaaggggatatcgtcacacagaaagggag
caagaacagaaaggtgggcgtggtcaaggtagaaatgggcgtggtcatagagggaaaggt
agctctgtaggagatgtaaggtctcagttgaggagtggtgacaaaactgatgaatcaaat
gacggtgataagggaacaactggcgggcttgtaaggtcaaaatataaaccatgcacagac
aaagataatacacaggaaagaagtccgaatgaagttgtcttaacagatctcccaagaaac
atctcagagagtgatgttgtatatcttgtgagagaggaatgtcatggatttgttgacgca
gtgttggcctccgggagatgctctctgaagtttaagagacgggaagatgcgatggaggca
gtttgtaagctttatgggaaaccaatctctggccattgtataaaacctgtcctctcctgg
cacaatgaagaagtggaaccacacattgcaaaaaaagtactgaaggacttaaaagaaaga
gaaatgccagagaaagtccatgacattaactataaaattacagaagaatgtaaagtcatc
aactcggatttgtcagattgcagagacgccttcaaagaaaacctgtcctttgctgaaatt
caccgatataaaatttctatcgaaacacatgagcaccatttggaggagaaacaaagattc
ctggatgagttcaacaacgcatgccttaatattgaaaccgctttggaaggtttagagtca
gaaacccaaaccttgtcagaggtacacaagattcgtcatcaatttctgagagaatgtcgt
cgtttggattcccctctaccggtttatggctacaggtctaggattgaggaagctatgcga
tggaataaagctgttgtcttgcaaggcgagacaggatctggaaagagcacacagattcca
cagtatctcgtagacatggccctggagagtcaggaagatgaaggctccagccagagacca
caatggcgggtagtttgcacacaacctagaagagttgcggcactcactctttcaaaacgt
gtcgctgaagaatacggatgccaggttagcgaagaagttggatattttgtcggcaacaag
aaatctgtcagtgccaaaacagttgttactttcatgacggatcggaaactcctcaacttg
atcatcgccgacccaaatctgtccgactatacttgcgtcatcgtcgacgaggcccatgag
agatctgtagacacggatatattgttggcaacgctgaagaaactccttcgaagcagaaaa
gatcttcaccttctcataatgtctgccacaatcgacaccaccttattctccaactacctc
gatgagtgtaaagagataaaggttcctggtcggacatttccggtggataaacgatggatt
ggtgatgatgtcagcatcggagagggtgactatgttgggaaagccgtcaaacagactgca
aaggtgcatcgagatgagaaggaaggtgacattctagtcttcttgacatcggccaatgag
attgaacaagcatgtcgagacttatcaacttccctcggccaaagacctgatgaccaagat
aaagaggcactgatactaccccttcatggacgactccagccagaagaccagatgaaagta
ttcgcagacgcaaaagctggacaaaggaagataatctttgcaaccaatgtcgctgagacc
tcagtgactattaaaggtatccgatatgtcattgacactggcgttgtcaaagagtgtcaa
tatgatccaaagcgtagcatgagtcttttgaaggtgacagcgataactcaagcgtcagct
cagcaacgggcgggccgagcaggtaggacaggcccaggtgtttgctatcgattgtacacc
aaagaagagtataaggacctgaatgaaatgatgaaaccggagattttgcgtgttcacctc
gggatggcagcactgcagcttttagagcttggtgtcgaagacgtggcgaactttgatttc
atccaggcgcctgatcgagaagctacacagcaggctatgactaccctgaggttgctgggt
gccgtggatgcagctaataagttgacctctttgggtcgtaagatggcaacatttccaatg
gagccacgtctctcaaaggttattcttgaaggagtagagaaacatcttacctctgaagct
gtcatcatcgctgccttgatctctgctcctggaagtttgttctatagaggaggctccgat
aaagacaaagagaaagcagaccgtctgaagctcaagtattgtcatgacagtggagatgtt
ataacaatgcttaaagcttacggatcttggaatagcaaagcagcggctaagcagaaggcg
tggtgtatggagaacagcatgaattccaagacgctgagagctgttcgagagtctgctaac
gaagcagcccaggtgttaaagcttaaacataacatcgagtgtaatgcaagggactacaag
atggaagccattgatgcggcaaagactgagtcacttcaaaagatcatcatgtcagcttac
tttcagacgttgagtttatacaacggtcatccaagagcaggttacacggttcttcctcat
cagaaatccgggttcatccatccatcttcgtctctcgttgcactagactgcaatcctaaa
tgggtagtgtatgaagagttcaaacaaacatcccgaagcttcctcttcaatgtgactcga
gttaacatcgattggcttcaggaagttgctccgatgttttatgacgagattgatgtgggc
gcacttcaagaaatggctttgcaagaggctcctgcgatccaacttggaactgctgtgatg
agacgtcttaccataaagagaaatgaaaaggtccgggctatggaagagtatatcacagaa
gtgaaaggttctccttgcattatccaggtcaacagagccacaaaaaagttgcagatgttc
gtgaagatgaacatttgcgagtttgcaacatcgtatgttgagagactcctcaaagaagag
ctggagtctatccagagagaacagattgaagtgccagtaggggaatcaggagttgtccgt
caagtcgtcgtagcaggaggtcagacaaaattcatcttgatgccaaatgattacagaagc
ctggaggtcagtaatgttacaggagacatgtccgaagatgatttgaagatgatttgtctc
tcttcttgttgcactcagaatgagattcttgacgtgtacaagtttcaaaagcaaactaca
gccaagtggggtcgcattaccttcagttcccccaagacagcggaggaaacaaagatgctg
ctagaagtagaggacacccttcagctcgaaccaattctgggacgtagttttcaaaacaga
gatatcgctagagtcagctcaaggatcgtggtcatatggtacacctggccgtcaaaaggc
caagcatttatcaactttgacacatcaaaccaagccttagaaatgaaagaaagcttgcaa
aattttgacttcaaagggaagctattggagtgccaacttaaaaagaataacacaagagct
ctgtacctccgaaacgttcacacagatgcaaccaatgaagaactggaagaagctattgaa
gattatacagactgcaaaaaagtcaaatgcagtattgctcgtcaacccccagcaattctt
atcaaagacgaccaggtcactcaagacatctacaaaatgttcgaaggcacactacgagaa
gatcaactagacatcaacatactgtcggcgcgatcggagaaaacacaaagcaggaaggct
atcgccaactttgagtgtgacaacgaagatgaagtagatggttgtattctgaatattcaa
gacaaccctccacgcaactcggcaggccagatttatattgtgaagcttacggcatcttgc
atgctcttctgtaatcctgacgtctacaagtgcattgagcaaagaatcacaaagctcgtt
gaggaggtgagcgaaggagtcagaaatttgaatgtcagagtgagtaagagcaagaagaca
aatgactgggtgataaacgtcgctggtgaaaacatccaagaagttcataggacacgccga
gaacttctgtcttacatccggggcgagacggtatcactaaatgatctgtgcgaggaggag
gtttcatttcagatcaaatatcacattctgaagttacttcacaagaatggcttgagacat
cttacttacgggttggaggctcacgcaatggtggacacccgtcgccatctcattgtgatt
tacggaaaggatgaggtcagagaagtcttgaaggagcaagtgaagaactacatcaacatc
atctgtaagaatcaactgaaagaaatttcattgactgcaggtctctctgaaggttgtact
aaagggagagctgtaagggcattagtgaaagcttatggaccttggcttaagaaacttgtt
gaagaaactggagccaaagctataacattgaacatgtgccaaggaaaccttcttatagag
ggcaatcagaatgtctttgataacgtccacaagatggtgagaaactgcctccaagaagct
ggacaacaagctgccatcagagttggaggagatgatgcaaccactgaagtggaatgcggc
atttgttacacagcagtggaagccactgaggagatgtatcgtctgagtgcttgctcccat
gggttccatcttcaatgccttcatgagatgtttaccgtcaggttacagaacgctagcaag
gattaccccattgagtgtccatgtgatggatgtggcctcccaatgttgctctgcgacttc
cgtgttctctgcagtgatgaaacaaagagacgacgcttgtttgatctggctctggagtca
catgtcacccagaagagcgagggaaaactgaagttttgcccaacaccagattgtcacatg
atctataagacaacgaaggatgtcggggtcttctcatgtcaggagtgtcggaatcgtttg
tgttcatcgtgtggttcagaacctcatatgggatatacatgcgaggaatttaaggcttat
ggcaaggactgtagcgacgtggcatttcagaagtggattcaaggaaaagatgtcaagaag
tgcccatgtggaatctatatcgagaaaattgagggatgctttcacatgacctgttctgag
tgtaagaagcacttatgttggctttgcctggctatcttcgatacaagtgacctgtgctac
gctcacctatcacagatgcatggaggttgttttcaatattaa
DBGET
integrated database retrieval system
