Luidia clathrata (European starfish): 117300269
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Entry
117300269 CDS
T10152
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117300269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117300269
Enzymes [BR:
arun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117300269
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117300269
mRNA degradation factors
3'-5' decay
Pan complex
117300269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
UCH
RNase_T
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
Motif
Other DBs
NCBI-GeneID:
117300269
NCBI-ProteinID:
XP_033639893
LinkDB
All DBs
Position
15:complement(11702230..11726119)
Genome browser
AA seq
1131 aa
AA seq
DB search
MEFQPAPGDYQGNEYIDGAIPVEGYAGDDGHPPIVDEYGDGTQMPMHGSYRELHSVMADG
GNHYGVSAVAFDRQEELLWMGNQGGHVTSYYGPQMQKHTSFQMHASSEIRQITTFDGGVL
GLSSNSLHCHARQGLRVFDYRGESLQDMQCMLIYNGTHLLMGGHQQLLVEFDLVEGREAG
SFTAQDPGVAIMRHGKNFICCGDTSGKVHLRDLNSLKVEHVLDAHSGTLSDFDVHGHQLV
TCGYGERNGGLSLDRYLMVYDLRTMRPMNPLHIPIEPWYLRYVPTYSNRVVVVSQTGQFQ
LLDPGGLVTPEAMLLYQVNIAGDMALALDVSSNYKAISFGDSGGCVHMWTDSEEVTFNAF
PRETEFAHPPDDHRPISISNEFASYSSIPMPFCDGTLLSDWPQDCCRPVMRQAPAVDPEI
LRSMKVVQFIGYAPNPGTKKRNQVMYKEVKPGKRKGKSQVPESPLGRDADTHMYMVPKYY
RKVEIKYSKLGVDDFDFRHYNQTNFAGLEPHIPNAYCNSMLQLLYFVEPLRCVLESHLCT
KEFCLACELGLLFYMLDQSKGQTCQGSNFLRAFRTIPEASALGLLLGDAEESAGKANFPR
LIQSWNRFVLQQLIQDTIETDTSPSGTERIKQMFESEVQTEVKCRCGKETERKSTSLLVT
LTYPEFLPPTASRPAKEVSFASVLQNSMLLDQTMQAWCDDCNRYQPTSQKRTYKRLPDVL
SINCHLESNNDMVFWKIQEQLALARESEAHKQQLEANIASIKMCRYGQACTRQGCKFRHM
DERDASNPLLQEENKASWLPHGLRIRLNKDGSIEIQEVRDEEKVENSTGFVNYYLHASVG
HIRDIRTGGNLIAHVQVGKTYHKRKEGVTHMQWYIFNDFSIESIEKHEVVQFNMEWKVPC
VLYYMREDINDHYEITIKSPIDHTVLQPEASLSQGVLSHSTFTPLGMEELPKEGDIIGID
AEFVSLNQEEAEIRSDGTRSTIKPSQMSAARISVTRGEGPLTGQPFIDDYISTQEQVVDY
LTKFSGIKPGDLDATISSKHLTTLKATYLKLRYLLDCKVKFVGHGLRKDFRVINLLVSHK
QVIDTAALFNLPKQRILSLRFLAWFFLGKIETLPSSHFQCYFQAYLISMGE
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggaattccagcctgccccgggggactaccaaggcaatgaatacatcgatggagctatc
cctgtcgaaggctacgctggtgatgatggacaccctcctatcgttgatgaatacggtgat
gggacccagatgcctatgcatggatcgtacagggagcttcacagcgtgatggcagatggg
ggcaatcactacggggtatcggctgtagcgtttgacagacaggaagaactactatggatg
ggaaaccaagggggccacgttacttcgtactacggccctcagatgcagaaacacacatca
ttccagatgcatgcatccagtgagatcagacagatcacaacgtttgatggtggagtgcta
ggattgtccagtaacagtcttcactgccatgctagacaaggactaagagtctttgactat
agaggtgaatctcttcaggacatgcagtgtatgttgatctacaatggcacgcacctcctc
atgggaggtcatcagcagctactagtagagtttgacctcgtagaaggcagagaggcgggg
tccttcacagcccaagatccgggcgtggccatcatgagacacggcaagaacttcatctgc
tgcggagacacaagtggaaaggttcatttgcgagatctgaactccctgaaggtggagcat
gttctggatgctcactccggaactctgagtgattttgacgttcatggacatcagctggtg
acgtgtggctacggcgaaaggaatggaggtctatccttggatcgttacttgatggtctac
gaccttcgaactatgcgacccatgaacccactacatataccaattgagccatggtattta
cgctacgtgccgacctactctaacagagttgttgtcgtcagtcagaccggtcagttccag
cttcttgaccctggtggtctggtgacccctgaagccatgctactctatcaggtcaacata
gcgggtgacatggcgctagcgttagacgtctctagtaactacaaggctatatcattcgga
gactctggaggttgtgttcatatgtggacagactctgaagaagttacgttcaatgcgttt
ccacgagagactgagtttgctcatcctcctgacgaccatcgcccgatttccatctctaat
gagtttgcctcatactcgtccattccgatgccattctgtgatggaacgctcctctctgat
tggccacaggactgctgccgacccgtcatgagacaagctccggcggttgaccctgaaata
ttacgctccatgaaggtggtgcagttcatcggctatgcccccaacccaggcaccaagaaa
cgcaatcaggtcatgtataaggaagtcaagccggggaagcgcaaagggaagagccaggta
cctgaatcaccactcgggagagatgcggatacccacatgtacatggtgcctaaatactat
cgcaaagtggagatcaaatactccaagctgggtgtggatgactttgacttcagacattac
aaccagacaaactttgctggtctggaaccccacatccccaatgcgtattgcaactcaatg
ctacagttgctgtacttcgttgagccgttaagatgtgtactagagagccatctgtgtacg
aaggaattctgtctggcgtgcgagcttggattgctcttctacatgttggatcagtcaaag
ggacagacatgccagggaagtaactttctgcgagcattccgtaccattccagaggcgtct
gctcttgggctgcttctaggggatgctgaagagtctgctggcaaggccaacttccctcgc
ctgatccagagctggaatcgcttcgtgcttcaacaacttattcaggacaccatcgagaca
gatacttctccatcaggaacagagaggattaaacagatgtttgagtccgaggttcagaca
gaggtcaaatgtcgatgcggaaaggaaaccgagaggaaatcaacaagtctgttagtcacc
ctgacatacccagagtttcttccaccaactgcttcgaggcctgccaaggaagtctcattc
gcatctgtccttcagaatagcatgctactggatcagacaatgcaggcatggtgtgatgat
tgtaacagataccaacctacgtctcaaaagaggacgtacaagcgcttgccagatgtctta
tccatcaactgtcacttggagtctaacaatgacatggtcttctggaaaatacaagaacag
cttgccttggccagggagtccgaggcccataagcagcagttagaagcaaacatcgccagc
attaagatgtgtcgttatggtcaggcatgcaccagacagggatgtaagttcaggcatatg
gacgaacgagacgcttcaaacccgctccttcaggaggagaacaaagcgtcttggttgcct
catggtctgaggataagactcaataaagatgggtctattgagattcaagaagtcagagat
gaggagaaggttgagaattcaacagggtttgtcaattactaccttcatgcgtcggttggt
catataagagatatacgtactggaggtaacctgattgcccatgtccaggttgggaagacc
taccataaacgtaaagagggagtgacacacatgcagtggtacatcttcaatgactttagt
attgagtccatagagaaacatgaagttgttcaattcaacatggagtggaaggtcccatgc
gtcttgtattacatgagagaagacatcaacgaccattatgaaatcacaatcaaatcaccc
atcgaccacaccgtcctgcagccagaagcctcgttatctcaaggtgttctcagtcatagt
accttcactcctctaggaatggaagaactccccaaagagggtgacatcatcgggattgac
gcagaattcgtctccttgaatcaggaagaagcagagattcgtagcgatgggacacgatca
accatcaagcccagccagatgtcggcagctagaatcagcgtcactcgaggagagggacct
cttactggtcaacctttcattgatgactacatatccacacaagaacaggttgtagattat
ctgactaagttctcaggcatcaagccaggtgatcttgatgccaccatctcctccaagcat
ctcaccaccctgaaggccacatatctcaagctcagatatctgctggactgcaaggtcaag
tttgttggtcatggtctccgcaaggatttcagggtcataaacctcctggtttcacacaag
caagtgattgacacagcagcactctttaaccttccaaaacagaggatcttgtctcttcgg
ttcctagcctggttcttccttggtaagatagaaacacttccatcgagtcactttcagtgc
tattttcaagcttatttgatttcaatgggggagtaa
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