Luidia clathrata (European starfish): 117300776
Help
Entry
117300776 CDS
T10152
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03030
DNA replication
arun03410
Base excision repair
arun03420
Nucleotide excision repair
arun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117300776
03410 Base excision repair
117300776
03420 Nucleotide excision repair
117300776
03430 Mismatch repair
117300776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arun03032
]
117300776
03400 DNA repair and recombination proteins [BR:
arun03400
]
117300776
DNA replication proteins [BR:
arun03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117300776
DNA repair and recombination proteins [BR:
arun03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117300776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
nSTAND3
AAA_22
PTCB-BRCT
RuvB_N
AAA_33
RNA_helicase
AAA_19
AAA_30
AAA_5
AAA_16
AAA_17
Ribosomal_L22e
AAA_7
AAA_14
NTPase_1
BRCT_2
Motif
Other DBs
NCBI-GeneID:
117300776
NCBI-ProteinID:
XP_033640459
LinkDB
All DBs
Position
16:complement(5897414..5915319)
Genome browser
AA seq
1112 aa
AA seq
DB search
MDIRKYFGAVPSSSSTKSKPSSSSNKKQPNGTGGKRKRRLDDDEEDFQDGGKRGKTSSSK
PAKMKKTAVIYDSDSDEETFPKKRKVPASKSPISVSTKSSSTKSKKVLSPSPVKKKVTTV
SDFFGASPIQRSSKVTPKKPRLGSEQHEDVDFKQTLEQLDQEHKTPTKSLRTDSVKSTDN
SSPCRRSPRIYKMDVSPAMKKGKGLASKVAEKVRANSTILVENTPERGQGERSSSRSKVT
VVEETPVSVRQTSKHRKSSDATPTKEKATPTKATPTKSTPTKATAIKVTPSKAMPLKATQ
IEAAVSAKTPTKATPTKATPTKGVPTNATPTNARSSRATPTKTPSVTGSKEVETPDQDSA
SKKKGGGANYRRYLSRDGPRSLGAKEMPEGEEGCLAGLTFVMTGVLDYVEKDEAKEGIER
MGGKVTTTVSKKTSYLITGRDPGPAKIQKAESHGTKILTEDEFFYFIRSRPGKKSSTIKK
EEMAQKEKPRAVKQPSPVPTQSPKPSTSHQLPSTSSQPKSQPTQAADQSGESLLWVDKYK
PHTMKQLIGQQGDRSCANKLLKWLKRWHDNNAGPSKERARFNKDDGFCFKAALLSGPPGI
GKTTTAELVCKELGYETLELNASSSRSKKTLDVIMKEFLHTDSIQGYLKVKGDQSKGSEV
KVHRQCLLMDEVDGMSGNEDRGGVQEFIQMIKKSHIPVICMCNDRNHPKIRSLANHCFDL
RFYRPQVKQIKGAMLSIAFKEGVTIPPLAMEHIITASNQDIRQVLHNMSMWSAGMKKLSQ
DQVDSDAQKAKKDLKLGPWDVLRQVFACGEEAEKMSLIDKMGLFFHDYSIAPLFVQENYL
AVRPKKAKGDLKKHLDLISKAADSMCQGDLVDRAIRTTQRWSLLPTQAIFASVVPGAIMK
GYLKEMITFPSWLGKNSTRNKNQRLLQEIQQHMRLSAAASIKDVNFDYIPRLRDFLTQPL
LTRESEGVSEVVELLNSYDLTREDFDTVLEVSQFEGRTKPMAAVPPKVKAAFTRAFNKEG
HMMPYAFGDVGKKRKGAVAMEDGDGYGDEEGAEPAVGEEEDSDDDISKNAMIKVKKTKGE
SSSTTSGVKGKCSKGKAAAKGRGTAKGKSKAK
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgtaagtattttggagctgttccttcaagttcatccactaagtctaaacca
agcagttcatccaataagaaacagccaaatggaaccggagggaaaagaaagagacgttta
gatgatgacgaggaagatttccaagatggaggaaagagaggaaagacttccagcagtaaa
ccggcgaagatgaagaaaactgccgtcatttatgattcagattcagatgaggagactttc
ccgaagaagagaaaagtcccagcctctaaatcacccatcagcgtttccacgaagtcatca
tcaaccaagtccaagaaagtcttgagcccctcccccgtcaagaaaaaggtcacaactgta
tcagacttctttggcgccagtcccatccagagatcttccaaagtcactcctaagaaacca
cgtctgggctcggagcaacatgaagatgtggacttcaaacaaacgctggaacagttggat
caggaacataaaacacctaccaagtctctgcggaccgatagtgttaaatcaactgataat
tcctcaccatgtcgaagaagcccaagaatctataaaatggacgtcagcccggcaatgaaa
aaaggtaaaggtttggcgagcaaagttgcagagaaagtacgagctaattccacaatccta
gtagaaaatactccagaaagaggtcaaggtgaaaggtcaagttccaggtcaaaggtcact
gtggtggaagaaacacctgtaagtgtaagacaaacatcgaaacatcgcaaatcatcagat
gccacacctacaaaggagaaagccacgcctacaaaagccacgcctacaaaatccacgcct
acaaaagccactgctataaaggtcacaccttcaaaagccatgcctttaaaagctacacaa
attgaagcagcagtatctgcaaaaacaccaactaaagctacaccaacaaaggccacgcct
acaaagggcgtgcctacaaatgccacgcctacaaatgccaggtcttcaagggccacacct
actaagacaccaagtgtgacaggcagcaaagaagtcgagacacctgaccaagactcagca
tcaaagaagaaaggaggcggggcaaattacaggagatatttaagccgtgatggaccaaga
tcacttggtgctaaggaaatgcctgagggtgaggagggctgtttagctggattgactttc
gttatgactggagttctggactatgtagagaaagatgaagccaaagaagggatagaacga
atgggaggtaaagttaccacaacagtgtcaaagaaaacatcttatctcattactggacgc
gatcctggacctgcaaagatacaaaaggctgaatcacatggcactaagattctcaccgaa
gatgaatttttttatttcatccgatcaagaccaggaaagaaatcatcaacaatcaagaag
gaagaaatggctcaaaaagagaagcctcgagcagtcaagcaaccttctccagttccaacc
cagtctcccaaaccatcaacatcgcaccaactacccagtacatcatcccaacctaaaagt
caacctactcaagcagctgaccaatcaggagagagcttactgtgggtcgacaaatataaa
ccacatactatgaagcagttgattggccagcaaggagatcggagttgtgcaaataaactc
ttaaagtggcttaaacgctggcatgacaacaacgctggacccagcaaagagagagctcga
ttcaataaagacgatggtttctgcttcaaggctgccttgctatctggacctcctggtatt
ggtaaaacaacaacagctgagttagtatgcaaggagttgggttatgagacattagaactc
aacgccagctcgtcacgaagtaagaaaacactagatgtcatcatgaaggaattcttacac
actgactcaatccaaggctacttaaaggtcaaaggtgatcagagcaaagggtcagaggtt
aaagttcatcgtcagtgccttttgatggatgaggtcgatgggatgtctgggaatgaggac
cggggcggagttcaggagtttatccagatgatcaagaaatctcacatccctgtgatctgt
atgtgcaatgatcgtaatcatcctaagattagatcattagcgaatcattgctttgatctt
cgattctatcgacctcaggtcaaacagattaagggtgcgatgttatccattgcattcaag
gaaggtgtaacaatcccaccgttagccatggagcatatcatcacggcatcaaatcaagat
atcagacaggttcttcataatatgagtatgtggagcgctggaatgaagaaactcagccaa
gaccaggtggattctgatgctcagaaggccaagaaagatctcaaactgggtccatgggat
gtattgcggcaagtgtttgcttgcggggaggaagcggagaagatgtctctgatcgataag
atgggattattcttccacgattattccatcgcgcctctctttgtccaagaaaactacttg
gctgtccgacccaagaaagccaaaggagatctcaagaagcatcttgatctgataagcaaa
gctgcagacagtatgtgtcaaggggatcttgtggatagagcaatccgtactacccaacga
tggagtctgttaccaacacaggcgatcttcgccagcgtcgttcctggtgcgattatgaaa
ggctacctgaaggagatgattacattcccaagctggttgggaaagaattcaacgagaaac
aagaaccaaagattactgcaagaaatccagcaacatatgagactgtctgcagcagccagc
atcaaagatgtcaactttgactacatcccacgcttacgggattttctaacgcaacctctg
ttgactcgggaatcagaaggcgtgtcagaggtcgttgagttgctcaatagctacgatctt
acaagagaggattttgatactgtgctggaagtgagtcagtttgaaggaaggacgaaacca
atggcagctgtaccaccaaaggtcaaagcggctttcacaagagcattcaacaaagaagga
cacatgatgccatatgcatttggtgatgtcggcaagaaacgtaaaggtgctgttgctatg
gaggatggggatggctatggtgatgaggagggggcggagcctgctgtgggggaggaagag
gatagtgatgatgacatcagtaagaatgctatgatcaaggttaagaaaaccaaaggtgaa
tcaagcagtacaaccagtggggtcaaaggtaaatgttcaaagggcaaagcagcagccaaa
ggacgagggactgcaaagggaaaatcaaaagccaaatag
DBGET
integrated database retrieval system
