Luidia clathrata (European starfish): 117300786
Help
Entry
117300786 CDS
T10152
Name
(RefSeq) pre-mRNA-processing factor 6-like
KO
K12855
pre-mRNA-processing factor 6
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117300786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arun03041
]
117300786
Spliceosome [BR:
arun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117300786
Complex C
U5 SnRNP specific factors
117300786
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP6_TPR
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
HAT_Syf1_CNRKL1_C
TPR_16
TPR_2
TPR_8
CFAP70_TPR_C
TPR_1
ARM_TT21_N
FAT
ARM_TT21_C
ARM_TT21_2nd
NatA_aux_su
TPR_21
TPR_CcmH_CycH
T7SS_EccA1_N
TPR_15
Tcf25
fn2
Motif
Other DBs
NCBI-GeneID:
117300786
NCBI-ProteinID:
XP_033640478
LinkDB
All DBs
Position
16
Genome browser
AA seq
926 aa
AA seq
DB search
MATPGGMLNKKKKDFIGISAPLGYVPGLGRGATGFTTRSDIGPAREANDISDDRHPAPKK
KKKDDEDEEEDLNDNNYDEFAGYGGSLFNTGPYEKDDEEADAIYEAIDKRMDEKRKERRE
KRFREEIERYRQERPKIQQQFSDLKRELSDVSEDEWLNIPEVGDARNKHQRNAKADKITP
MPDNFLSKHAMSTESMTTLDPRQQALGGMATPYPGGMTSSGDNDLRKIGEARNTLMDVKL
NQVSDSVSGQTVVDPKGYLTDLQSMLPSYAGDVADVKKARLLLKSVRETNPNHPPAWIAS
ARLEEVTGKLQAARNIIMRGSEVCPRSEDVWLEAARLQPGDTAKAVIAQAVRHLPNSVKI
WIRAADLELETRARRKVFRKALEHIPNSVKLWKSAIELEGPEDARILLSRAVECCPTSVE
LWLALSKLENYENARKVLNRARENIPTDRKIWISAAKLEEAERNHLNVDKIIDRALTSLR
SNMVEINREQWIKDAEECEKAGSIATCQSIIRAVIGVGLEDEDRETTWMDDADSCASHQA
IECARAIYAHALTGFPSRKKIWLEAAYFEKNHGSRESLESLLQKAVGHCPKAEVLWLMGA
KSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEDERARRLLARARNSAPTA
RVWMKSVKLEWQLGSIEKARQLLDEGVKHYPDFSKLWMMRGQIAEQLGEREDARKTFQQG
LKKCARSVPLCLLAARLEEKIGNLTKARAMLEKARLMNPQCPELWLEAVRIESRSGNKNV
AQATMARAMQDCQGSGILWAEAIFLEARPQRKTKSVDGLKRCEHDPHVLLAVSKLFWSER
KISKAREWFNRTVKIEPDLGDAWANFFRFEIQHGNEEQQESVRKRCVEAEPRHGELWCSV
SKNIANWRCKTNEILPMVATLISTVF
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcccggtggtatgctaaacaagaaaaagaaggatttcatcggcatatctgct
ccacttggttatgtacctggcttaggaagaggagctactggattcacaactcgatctgat
attggaccggcaagagaagcaaatgacatcagtgatgacagacatccagctccgaagaag
aagaagaaagatgatgaagatgaggaggaagatttaaatgacaacaactatgacgagttt
gctggctacggtggaagtctgttcaacactggaccctatgagaaagatgatgaagaggca
gacgctatatatgaagccattgataagcggatggatgaaaaacgcaaggaaagaagagaa
aagcgatttcgtgaggagattgagcgctacagacaagaaagacccaagattcaacagcag
ttttcagatctcaagcgtgaactgtctgatgtaagtgaagatgaatggctgaatatccca
gaagttggcgatgctcggaataaacaccagcggaatgccaaggcagacaaaatcacccca
atgcctgacaactttctgtcaaaacacgccatgagcaccgaatccatgacgacccttgac
cctcgccagcaagccctgggaggtatggcgaccccgtatccgggaggcatgacctcatct
ggagataatgacctgaggaagattggagaagcgagaaacaccctcatggacgtcaaactg
aaccaggtgtctgactctgtcagtggacagacagtggttgaccccaagggttacctgact
gatctacagagcatgcttccatcctacgctggggacgttgccgatgtgaagaaggctaga
ttgcttctcaagtcggtcagagagaccaaccctaaccatcctccagcttggattgcctct
gcccgtcttgaggaagtcacagggaaacttcaagctgctaggaacatcatcatgagaggt
tctgaagtgtgtccacgtagtgaagacgtgtggcttgaggctgctagattacagcctggt
gacactgcaaaggctgttattgcacaggctgtccgccatcttcccaactcagtcaagatc
tggatcagggcagcagaccttgagctggagactagagcaagaagaaaggtctttagaaaa
gcgttggaacacattcccaactctgtcaagttgtggaagtcagcgattgagctggaggga
ccagaggatgctagaatcctactcagtcgagctgtagagtgttgtccaacaagtgtagag
ctttggttggccctctcaaaactggagaactatgaaaatgctcggaaggttctcaacaga
gctagagaaaacattcctaccgatcgtaagatttggatttcagccgctaagctggaagag
gcagagcgaaaccatctgaacgtagataaaatcatcgacagagctttgacatcgttacgg
tccaacatggtggagatcaacagagagcaatggatcaaagatgcagaggagtgtgagaaa
gctggtagtattgcaacatgccagtctattatacgcgcagtaattggtgttggtcttgag
gatgaggatcgtgagacaacctggatggatgatgcagatagttgtgcatcccaccaagcc
atagagtgtgcccgcgctatttatgctcatgccctgacagggtttccgagtcgcaaaaag
atctggctggaagctgcttattttgagaagaaccatgggtccagagaatccttggaatct
ctactgcagaaggctgtaggacactgtcccaaggctgaagtactgtggctcatgggtgcc
aaatcaaaatggcttgctggtgacgtaccagccgctcgtagcatcctggcattggccttc
caggctaacccaaacagcgaagagatctggttggctgccgtcaaactggagagtgagaac
aacgaggacgagagagcgcgcagactgctagcaagagcaagaaacagcgcccccacagcc
agggtatggatgaagtctgtcaaactggagtggcaactgggcagtattgagaaggctcgg
cagttattggatgaaggagtcaaacattacccagacttctctaagttatggatgatgaga
ggtcagattgctgagcagctcggggaaagagaagatgccagaaagacattccaacagggt
ctgaagaagtgtgcccggtctgttccgctgtgtcttcttgcagcaagactagaagagaag
attgggaacctgaccaaggcaagagcaatgctggagaaagcacgactcatgaatccgcag
tgtccagaattatggcttgaagctgttagaatagaatctcggtctggaaacaagaacgtt
gctcaagccacgatggccagagcaatgcaggactgtcaaggatcagggattctatgggct
gaggccatcttcctagaggctcgaccacaaaggaagactaagagtgtagacggactgaag
agatgcgagcatgacccacatgtgctgctggcagtttccaagttattctggagtgagcgt
aagatcagcaaggcgagggaatggttcaatcgaacagtcaagattgagccggatcttggg
gacgcttgggctaacttcttcagatttgaaatacagcatggaaatgaggaacagcaagag
tcggttcgtaagcgttgtgttgaagcagagccccgtcatggtgaattatggtgtagtgtc
tcaaagaacatcgccaactggagatgcaagaccaatgagatcctaccaatggtggcaacc
ctcatcagcactgtcttctag
DBGET
integrated database retrieval system
