Luidia clathrata (European starfish): 117300987
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Entry
117300987 CDS
T10152
Name
(RefSeq) squalene synthase-like
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun00100
Steroid biosynthesis
arun01100
Metabolic pathways
Module
arun_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
117300987
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
arun01006
]
117300987
Enzymes [BR:
arun01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
117300987
Prenyltransferases [BR:
arun01006
]
Terpene biosynthesis
Squalene/phytoene synthase
117300987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Motif
Other DBs
NCBI-GeneID:
117300987
NCBI-ProteinID:
XP_033640753
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All DBs
Position
16:complement(11096174..11109087)
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AA seq
409 aa
AA seq
DB search
MDLLKSITHPDEVLALLKYKIGGGPTKSKQNLASLSSTARTCYKYLNLTSRSFAAVIQAL
DGELRHAVCIFYLVLRALDTVEDDMTIPLKEKIPMLQTFYKNLEDTTWTYTKSNEKDRIV
LEDFQSIAHEFRSLSKCYRVVISDITDKMGNGMCEFAQRDVVTNKDWDLYCHYVAGLVGI
GLSRLFSASHLEDAIVGEDTYLANSMGLFLQKTNIIRDYLEDSLEGREFWPKETWSKYTS
ELKNFQKRENLSSSLQCLNELVTNALHHVPDVLKYMSRLHNQSVFNFCAIPQVMAIATLA
ECYNNPDVFSRVVKIRKGQAVSMMMEATSMANIRAIIHHHTQQISRSIPSKDSSAELTRK
IVEINLSLSRSSEQLATHSLYPPLYVSLAIMVVMISYSYGTQILHYLNL
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggatctgctgaaatctataacccatcctgatgaggtacttgcgctgctcaagtacaag
attggtggcggtcccacaaaatctaaacaaaacttggcctcgctgagcagtactgccagg
acatgttataagtaccttaatctgaccagcagaagttttgctgcagtcatacaggcatta
gatggagagctaaggcatgcggtctgcatcttctacctggtcctgcgagccttggacaca
gtggaagatgacatgaccatccctcttaaggagaagatcccaatgttgcagacattctac
aagaatcttgaagacacaacgtggacctacacaaagagcaatgagaaggatcgtatcgtc
ttggaagactttcagtcgattgctcatgagtttcgaagtctttccaagtgctatcgtgtt
gtgatatcagacatcactgataagatgggcaatggtatgtgtgagtttgctcagcgagac
gttgtgacgaataaggactgggatctgtactgccactatgtagctggcttggttggtatc
ggtctctcccgactattctcagcctctcatcttgaagatgccatcgttggcgaagacaca
tatctggctaactccatgggactcttccttcagaagacaaacatcatcagagattatctc
gaagatagtctagaaggaagagagttttggccaaaagagacatggagtaaatacacaagt
gaactgaagaacttccagaagcgagaaaacctatcgtcctccttacagtgcctgaatgaa
ctcgtcaccaacgctcttcatcacgttcctgacgtcttgaaatacatgtctaggcttcat
aaccagagcgtcttcaacttctgtgcaattcctcaggtgatggccatagctaccttagcc
gagtgttacaacaatcctgatgtattctctcgagtggtcaagattcgtaagggtcaagcg
gtcagcatgatgatggaagcaacgagtatggccaacatcagggccatcatccatcaccac
acccaacagattagcaggtcaataccctctaaagattcctccgctgagttaacgagaaag
attgttgaaatcaacttgagcttgagtcgatcttcagagcagttagcgacgcacagtttg
tatcctccgctatatgtttccttggccatcatggttgttatgatcagctatagttatggc
actcagatacttcattatctcaatttataa
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