Luidia clathrata (European starfish): 117301836
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Entry
117301836 CDS
T10152
Name
(RefSeq) ATP-dependent RNA helicase cgh-1-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117301836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117301836
03036 Chromosome and associated proteins [BR:
arun03036
]
117301836
Enzymes [BR:
arun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117301836
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117301836
mRNA degradation factors
5'-3' decay
Decapping complex
117301836
Chromosome and associated proteins [BR:
arun03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117301836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
117301836
NCBI-ProteinID:
XP_033641722
LinkDB
All DBs
Position
17:1380239..1394203
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AA seq
517 aa
AA seq
DB search
MASAAAAAPGQEVNRMNNHGANSPARGVDGSLVRQGPPPSMGGMGSLKMNGPQSNANASA
SQNAAKSKVVQSNNSSGKPASGDWKAGLKQPPKDSRFKTSDVTNTKGNEFEDYCLSHGLL
KGIFEKGWEWPSPIQEASIPMALSGHDIIARAKNGTGKTGAFTIPMLERTQLNKNEVQGL
VLVPTRELALQTSQICKELSKHLGHQVMVTTGGTSLRDDIIRLQQTVHLIIATPGRILDL
CRKGVAKLDKCGILVLDEADKLLSQDFKNMLDDLIAFLPNDRQIMLYSATFPTTVKAFME
RYLPNPYQINLMEELTLKGITQYYAYVKEREKVHCLNTLFSKLQINQSIIFCNSTQRVEL
LARKVTELGYSCFYIHSKMRQEHRNRVFHDFRMGACRNLVASDLCTRGIDIQAVNVVINF
DFPKLSETYLHRIGRSGRFGHLGLAINLVTHEDHKSLCLIEQQLATEIRPVPSEVAIDKS
LYVAEFQMPGGDDDRKKPTQPGSSKGQSTKPKQNNAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcagccgctgctgcaccaggccaggaggtaaacagaatgaacaatcacggt
gctaacagtcccgctcggggagtcgacgggagtcttgtgagacaaggtccgcccccatcc
atgggaggaatgggttccttaaaaatgaacggacctcagtcaaatgcaaatgcatcggcc
agccagaacgctgccaagtctaaagtggtgcaatcaaataactcatctggaaagcctgct
agcggagactggaaagctgggctaaagcaaccaccaaaagattccagatttaaaacaagt
gacgtgacaaacacaaagggaaacgagtttgaggactactgcctgagtcacggtctcctt
aaaggcatcttcgagaaggggtgggagtggccttcccccattcaggaggcgagcataccc
atggctctttcaggtcatgacatcatcgccagagcgaaaaatggaacgggtaaaaccggc
gcattcacaatcccgatgctggaacgcacacagttgaacaaaaatgaagtacaaggtttg
gtgttggtaccaacgagagagttggcgctgcagacgagtcagatctgcaaggagctgtcc
aagcatctcggccatcaagtcatggtcacaactggaggtaccagtctcagagatgacatc
atccgtttacagcagacagtacatcttataatagcaacacccggccgtattttggactta
tgtcgtaagggggtggccaagctggacaagtgtgggatccttgtgctggatgaggctgac
aagctgctgtcacaagatttcaagaatatgctggatgaccttattgccttcttgcccaac
gaccgtcagatcatgctgtattctgccacctttccaacgacagtaaaagcatttatggag
aggtacctgcctaatccctaccagattaacttgatggaggagttgacgttgaagggaatc
acgcagtattatgcgtacgtcaaagaaagagaaaaggtccactgtcttaacacactcttc
tcaaagctgcaaatcaaccagtccatcatcttctgcaactccacccagcgcgtggagttg
ctggcccgcaaagtgacggagctaggctattcgtgtttctacattcactctaagatgcga
caggaacacagaaatagggtcttccacgacttcagaatgggtgcctgccgcaacctggtg
gcttctgatctttgcaccagaggtatcgacatccaagccgtcaacgtagtcatcaacttc
gacttccccaagctctcagagacatacctacatcgcatcggaagatccggccgctttggc
cacctcggtctggccatcaacctggtcacgcatgaggatcacaagagtctctgcttgatc
gagcagcagctagccactgagattcgtccagtgccaagtgaagtggcgatcgacaagagt
ttgtacgtcgccgagttccagatgcccggaggagatgatgacaggaagaagccgacacaa
cccggttcgtctaagggtcagtcaactaagccaaagcaaaacaacgcaaagtag
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