KEGG   Luidia clathrata (European starfish): 117302231
Entry
117302231         CDS       T10152                                 
Name
(RefSeq) DNA ligase 3-like
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
arun  Luidia clathrata (European starfish)
Pathway
arun03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:arun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    117302231
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:arun03400]
    117302231
Enzymes [BR:arun01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117302231
DNA repair and recombination proteins [BR:arun03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     117302231
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP zf-CCHH DNA_ligase_A_C BRCT_2 RNA_ligase Permu_RdRp_palm mRNA_cap_enzyme BSP_II
Other DBs
NCBI-GeneID: 117302231
NCBI-ProteinID: XP_033641965
LinkDB
Position
18:complement(8874617..8904509)
AA seq 962 aa
MAENRYAIDYARLGTSKCKKCKQGITKKDPRIAKLVANPFSEDGGDMKQYHHVKCMFEAL
QRARPSTKKIEEPDDLEGFDVMEDEEKKLVKELIADLATKTQNKAKTPAKKKTVQSTLSP
AGKVTTPSKSPTATAPSASTSATSSKSSADLTDTDTSHPDNSFREFRKLCARISDQSAYL
SKTREVATFIKKGSSGDGFKGDTYLLLKLLLPGVVKRVYNINSKQLVKVFSQVFGTNLEE
MVEDLDQGDVAETVQKFFDQSEECPPAKKSRLSIHEVDDFLERMAKLTKETEQCVHLTKI
AKRCTGNDLKMVVRLIKHDLRINSGAKHILEALDPNAYEAFQASRDLRDVVDRVNKNKEA
SNGRPGMTKKLSVRASLMTPVLPMLAEACKSVEMAMSKCPNGMFAEIKYDGERVQIHKQG
DTFQYFSRSLKPVLPHKVTHIKDYLPKACPQGNSIILDSEILMVDKTGKILPFGSLGKHK
RNAFSDANVCLFVFDCLHFNGEDLMDKPMKERRKIMEQNLTPIKNRIMFSESKDVSKASE
LSSLIMSVIREGLEGLVLKDKMSVYEPGKRHWLKVKKDYLAEGAMADTADLIVLGGYFGT
GSKGGIMSTFLLGVHDPATDKFLTVTKCTGLDDQTMNQVNRDLDVNKISKDASKVPSWLS
VSRTLVPDFVVKDPKKSPVWEIMGAEFTQSESHTAGGISIRFPRVSRFRDDKDWHSANNL
DRLQALYKKSKETSDIPDLISKKTPTPTKITARMHKKKGGASKEEEEEEEEAVIEDFEDS
DEDEDIKPSPAKKMKLDTNGSGTSSQSKPTCKYGAQCYQTNPQHKAKFSHPGDTDSSPSK
KIAPSPSKMTPTKPSAAASTSASKPNTSSTQSPSKALPNIFSNVAVYMPKTTPDFYKLKR
YLIAYDGDIVTDFNQANATHFIHDPQAEEPTSTAGKTIVTADWIWQCVKLKKLLPTAKFA
PK
NT seq 2889 nt   +upstreamnt  +downstreamnt
atggccgagaaccgctacgccatcgactatgctcgtttggggacatctaagtgtaagaaa
tgcaaacagggtatcactaagaaggacccccgcatcgctaagctggttgccaatccattt
tctgaggatggaggagacatgaaacagtaccaccacgtcaagtgtatgtttgaggcgcta
cagcgggcgcggccgtcgacgaagaagatagaggagcccgacgatcttgaagggtttgac
gtgatggaagacgaggaaaagaaattggtcaaggaattgatcgcagacctggcaaccaag
acgcaaaacaaagccaaaactccagccaagaagaagacagttcagagtactctctcccca
gctgggaaggtcaccacaccctccaaaagccccactgctactgctccttcagccagcact
tcagcgacatcatctaagagctcggcagacttgaccgacacagacacaagtcatccagac
aactcattcagggagttccgaaaactctgcgcccgaatctctgatcaatcggcttacctt
tccaaaaccagggaggttgcgacgttcatcaaaaaaggatcatctggtgatggattcaaa
ggagacacatatctgctgctgaagctgctgttgccgggtgtggtcaaaagagtttacaac
atcaacagtaaacaactcgttaaggtcttcagccaggtctttgggactaatttggaggag
atggtggaagacctggaccaaggagacgtcgctgaaacagttcagaagttctttgatcaa
agtgaggaatgccctccagccaagaagagcagactttcaattcatgaggttgatgatttc
ctggagcgaatggccaagttgactaaagagactgagcaatgcgttcatctgacgaaaata
gctaaacgctgcactggcaatgacttgaagatggttgtacgcctcataaaacatgattta
cgtatcaactctggtgcaaaacacatactagaagccctagatcccaacgcctacgaagca
tttcaagcctcacgtgatcttcgggatgttgtcgatcgcgtcaacaagaacaaggaggcg
tccaatgggcgtcccgggatgaccaagaagcttagcgtcagggcttcactgatgacacca
gtgctccctatgttggctgaggcttgcaagtcagttgagatggccatgagcaagtgtccc
aacggtatgtttgctgagatcaagtacgacggtgaacgggtacagatacacaaacaaggt
gacaccttccagtacttcagtcgcagtctgaagccggtcttacctcacaaagtcacccat
atcaaggattacctgcccaaagcttgccctcagggaaacagtatcatattagacagtgag
attctgatggttgataagactggtaagatcttgccgtttggatccctcggcaaacacaag
aggaatgccttcagcgatgccaacgtgtgtctcttcgtttttgactgtcttcacttcaac
ggggaagacctcatggacaagcctatgaaggagaggagaaaaatcatggagcagaacttg
accccgatcaagaaccgaataatgttctccgagtccaaagatgtctcgaaagcaagtgag
ttatcgagtttaataatgagcgtcatccgagagggtttggagggcctcgttctcaaagac
aagatgagtgtttatgagccaggcaagagacattggctgaaggtgaagaaggattaccta
gcagaaggtgcaatggcagacacagctgatcttattgtcttagggggatacttcggcaca
ggcagcaaagggggcatcatgtcgacattcctcctgggcgtccacgacccggctacggac
aaattcctgacggtcacaaaatgcactggtctggacgatcagacaatgaatcaagtcaat
cgtgacctggacgtcaataagatcagcaaagatgcatctaaggtaccaagctggctcagc
gtcagccggactctggtgccagactttgtggtcaaagatccaaagaaatctccagtgtgg
gagatcatgggggcagagtttacccagtcggagagccatacagcaggggggatatccatc
cggttcccaagggtcagtcgattcagagacgacaaagactggcattcggcaaacaacctt
gacagactccaggctctttataagaagtccaaagagacaagcgacataccggatctgatc
tccaaaaaaacccccaccccaaccaaaatcacagccaggatgcacaagaagaaaggcggg
gcctccaaagaagaagaggaggaggaggaggaggcggtgatagaggattttgaggattct
gatgaagatgaagacataaaaccaagccctgctaagaaaatgaagttagatactaacggc
agcggtacctcctcccagagcaagccaacttgtaagtacggggcccagtgctatcaaacc
aacccccaacacaaagcaaaattcagccaccctggtgacacggatagctcgcccagtaag
aagattgccccaagccctagtaagatgactccaaccaaacccagcgcagccgcctcaaca
agtgcctctaaaccaaacacgtctagcacccaaagtcctagcaaggctctgcccaacatc
ttctccaacgttgccgtctatatgccgaagacgacaccagatttctacaaactgaagcga
tacctgattgcatacgatggagacatcgtgacagacttcaatcaagccaatgcaactcat
tttattcatgacccacaagcagaggagccaacgtcgacggctggcaaaaccatagtcaca
gcggactggatctggcaatgcgtgaaactcaaaaagttattgccaactgcaaagtttgcg
cccaaataa

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