Luidia clathrata (European starfish): 117302392
Help
Entry
117302392 CDS
T10152
Name
(RefSeq) nephrocystin-4-like isoform X1
KO
K16478
nephrocystin-4
Organism
arun Luidia clathrata (European starfish)
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
arun03037
]
117302392
Cilium and associated proteins [BR:
arun03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
117302392
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPHP4_C2_3rd
NPHP4_C2_2nd
Ig_NPHP4_1st
Ig_NPHP4_4th
Ig_NPHP4_2nd
Ig_NPH4_3rd
NPHP4_SK
Motif
Other DBs
NCBI-GeneID:
117302392
NCBI-ProteinID:
XP_033642215
LinkDB
All DBs
Position
18
Genome browser
AA seq
1583 aa
AA seq
DB search
MNSQASGSMGRLRVPTISLATPALLEPPNFSSTGRLSATLNTLPSQISTTRPKSNQSFQT
LTQTFTQTLTLARVSQTKQEVRNLSKFFSEHSVIPAASRRTLLKESTQEDWVPFCVTILF
VDGIPQAKEHSWSFEDEEEEGVKIEYEIRLHLFDLTYTMFFGRSWVGPRRTIKKGAAQNT
RLQCNVPVYFHTSLADPNIVIVIEIVRVTVPKLGKAQHMSSGWGILRIFQQGDFTDTSHS
TPAPVKRVDLFHGSPRALFFLGDDIEGNKKLTIISECQFCYTIRTHRYMDKIMHLLPENV
LVGGNELIPGVTVVDPKDGGDSLRRPKPMKQVQAVIDKLSLILYPNIDQFEEDLCKHLNS
DRLSMEHVQTEKSSVVVSERRLQIGVHNGWGYISKPQILLLDTSDSSMARGGIRGSMKKT
KSRQGSAESRENLGSALLVKNKITLPYLVDSPSFAIVFFLEYIVSMPTSTQDKKLSVSMN
RAQTQTVALRWGAWTPSFKESTSEVSIQLQGGALPNPDNMLVYKNLSAELSDKEMAKLAA
GKLQFVFKSKRPGGSRPISPMSTEPSLLTDSEKGRFPSAASLPSVTTATDQASIAGDIMG
MVSGRPPMPRSPRVPSRGQSSPIGHAPIQPMNLQPSMAYPQHGSQPITNQYGHMTASQPP
GSLHPTGQYTSDQYQGRGQTGTQSLYPMEIKHMEVGTVSNGDQLEELPYTPVHAPIMPVG
PYHTSGPGLSRASYAHLYQAGFVNILDRQGEVPEVVDPSDHVILNPERENKDLLQCNEIV
VRFLAVSRMLQFQQSVPSDSPRTVFFTFQFYRYPPVTTERLLLGNVEGNLTADSHSLPCV
LKKMKNDGKKNDEPPGWTVRYTVDPSFLKPGEGRLFVKYLYQQTLHVDVWDGDSLLLLGS
CAVELKHLLRCGREAVQITHELDVITTEYGEDANAMTGDLMRSGSVRPVGVKAILKGRLH
LQLANVGHRVDVNVMKAGTMPVKAAKVVVQEDGSGAFLGGSVNLGTRPSGLGLANLRQKR
SYMASHMVETDKELASSLLMTRKGQIDQTGQATGREADSKKQRKLARMQAIRQAQNNDTN
KGPLSQSLLLKKEEKVQRTRDLKTIEIHRDRMKKDGILSMLQSAITTEHIVHPTFGQAEF
FEFVLRNPYNVQHTISIQWDEPELSVITDPREWRHFKQLFETYTAIEENMFNQDKKTDGD
VPGLQLFLRPKETVNVPFKYQSFKANHAVQPQGPQVTSKPHFKIQLPEEHKEVDLALDSR
NVRVYFKTQDNKPIAILSLNVEPQPHVIDQTFRFNHPEQSFLKKSIRLPPFHSTQGLHQG
GGAVGQLFVKCSDENAICETKRVPPGEPQDVYVKVACGLSPSIKKLFILIYSTPFLSRPL
QTWQFYIHALQRVDVSCVQGQTSRQSLILRGTHASRLVQSFSSHPNEMQLLPSEPFMLLA
NSVHEIHVGVRPLSVGNKFMYINVVDNEYHQLIRSWLVCVQCRQPVISKAFELQLPVGGG
KGSNKRITYTNPYPHHKVFNIRCNRDDLLQFKETRVQIDGGETYGLGLRFSPCQQAGSAE
ILIFINDEQDNNEETFLVRAIYS
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcaagcatcaggaagtatgggtaggctgcgggtaccaaccatctctctggcc
acacccgctctgctggaaccgcccaacttttccagcactggacggttatcagccaccctc
aacaccctcccgagccaaatatcaacaactcgtcctaaatctaaccaatcttttcaaact
ttgacgcaaacttttactcagactttgactctagcaagagtgtctcaaacaaagcaggag
gtcagaaacttaagcaagtttttctcggagcattctgttattccggctgcttctagacgg
actctcttaaaagaaagcacgcaggaagattgggtgccattttgtgtaacgatacttttt
gtggatgggataccacaagcaaaagaacattcctggagctttgaagatgaggaagaggaa
ggtgtgaagattgaatatgagatcagactgcacctttttgacttgacgtacaccatgttc
tttgggcgttcgtgggtcgggcctcggcgtacaatcaagaaaggcgcagctcagaacaca
aggctacagtgcaatgtgccagtgtattttcacacctcgttagccgaccccaacatcgtc
atagtaattgaaatagtacgggtcactgtaccaaagctcggcaaagctcaacacatgtca
agtggatggggaatcttaagaattttccaacaaggcgatttcaccgatacatctcatagt
acgccggcacctgtcaagagagtagatttatttcatggatctccaagagctctcttcttc
cttggagatgacattgaaggaaataaaaagctgacgatcatatctgagtgtcagttttgc
tacacgatacgcacccatcgttatatggataaaatcatgcatctactacctgagaacgta
ctggtgggtggcaatgaactgatacccggtgtgactgtggtggatccaaaagatggtggg
gacagtttacgtcgacctaaacccatgaagcaggtgcaagccgttatcgataagctctcc
ctcatcctctacccaaatattgatcagtttgaagaagatctatgcaagcatttaaactca
gaccgactatccatggagcacgtccagactgagaagtcaagtgtcgtcgtctcagagcga
agacttcagattggtgtccacaatggctgggggtacatcagtaaaccacagatccttctc
ttagatacctctgactcgtccatggctagaggaggcatcagaggcagtatgaagaagaca
aagtcaagacaaggctcggcagaatctagggagaatcttggatctgctttacttgtcaag
aataagattactttaccttatcttgttgatagtccatcgttcgcaattgtgttctttctt
gagtacatcgtatccatgccaacatctacgcaagacaaaaagctttctgtgagcatgaac
agagcacaaacccaaacagttgctctacgctggggggcatggacaccatcctttaaagag
agtaccagtgaagtctcgatccagctgcaagggggcgctctaccaaaccctgataatatg
ttagtctataagaacctcagcgctgagttgagcgataaggagatggctaaactcgctgcc
ggaaaactacagtttgtcttcaaatccaagagaccagggggatcgaggcccatatcccca
atgtcaaccgagccatctctactgactgactctgagaaaggtagatttccatccgctgcg
tctctcccgtcagtaactacggctacagaccaggcatcgatagcgggtgacatcatgggt
atggtgtctggaagacctccaatgccaagaagtcccagagtgccttcaaggggtcaatca
tcaccaatcggtcatgctccgatccaaccaatgaacttgcaaccgtctatggcatatccg
caacacggcagccaaccaataacgaaccagtacggtcacatgacagcttctcaaccaccc
ggctccctccatcccaccggccagtataccagtgaccagtaccaggggagaggccagact
ggaacccagtccttgtacccaatggagatcaaacacatggaggttggtacagtcagtaat
ggagatcagctggaagagcttccctatacacctgtacatgcacccattatgccggtaggc
ccataccacacaagtggtccaggactaagcagagcctcttacgctcatctctaccaggca
gggttcgtcaacatcctggacagacaaggagaggttccggaggtcgttgacccctcggat
catgtgatcttaaacccagagcgtgagaacaaggatcttctacagtgcaatgagatcgtt
gtaagattcctggctgtttcgagaatgcttcagtttcagcagtccgttccttctgattca
ccacgcaccgtgttcttcaccttccagttctatagatacccaccggtcacaacagaaagg
ttattacttgggaatgtggagggtaacttgacggcagattcccacagcttgccgtgtgtt
cttaagaagatgaaaaacgatgggaagaaaaatgatgaaccacctggctggacggtgcgt
tacactgtggatccttccttcttaaaacccggtgagggacggctatttgtgaagtattta
tatcaacagactctccatgttgatgtatgggacggagactcattgcttctgcttggttca
tgcgccgtggaactcaagcatcttttacgatgtggacgtgaagcggtgcaaatcacccat
gaactggacgtcattactactgagtatggtgaagatgcaaatgccatgactggagacttg
atgagaagtggtagcgtccgccccgttggcgtcaaagccattctgaagggtcgactccat
cttcagttggccaatgttgggcaccgtgtagacgtgaacgtgatgaaggcaggtacgatg
ccggttaaggccgctaaggtggtggttcaggaggacggaagtggagcttttcttggcggg
agcgtcaatcttgggactcgaccaagcggacttgggttagccaacctgaggcagaaacgt
agctacatggcatcacacatggtggagaccgacaaagagctggcgtcatccctcctcatg
acgcggaaggggcaaattgatcaaactggtcaggccaccgggcgggaggctgactccaag
aaacagaggaagctcgctcggatgcaggcaatcagacaagctcagaataacgacacaaac
aaaggcccactcagccaaagtttactgttgaagaaagaggagaaagtgcaacggactaga
gatctaaagacgattgaaattcatcgtgacaggatgaaaaaagatggcatcctctcgatg
ttacagtcggcaatcaccacagaacacatcgtccatccaaccttcggacaagcggaattc
tttgagttcgtcttgaggaatccgtacaatgtccagcataccatctcaatacagtgggac
gaacctgagctgagtgtaattacggaccccagggagtggagacatttcaagcagctcttt
gagacgtatacagccatcgaggagaacatgtttaatcaagataagaagacggacggagat
gtgccaggtctacaactattcctcagacccaaggagacagtcaatgttccttttaagtat
cagagcttcaaggctaatcacgctgttcaaccacagggtcctcaagtcacttccaaacct
cacttcaagattcagttacctgaagagcacaaggaagtcgatctcgccttggattctaga
aacgttagggtatacttcaagacgcaggataacaaacctatagccatcttgtctcttaat
gtcgagcctcaacctcacgttattgatcagacgtttcgatttaatcatccagaacaatcg
ttcctcaagaagtccatccgtctacctccatttcattccacccaaggcctacatcaagga
ggtggtgctgtggggcagctttttgtcaaatgcagcgacgaaaatgcaatctgtgaaaca
aagagagtgcctcctggtgagcctcaggatgtgtacgtcaaggtagcgtgtggtctgtcg
ccctctatcaagaagctgttcatcctaatctactcaacaccctttctttctagacctctc
cagacgtggcagttttacatccacgctttgcagagagtagacgtgagttgcgtccaggga
cagacaagtcgccagtccctcatcctcagaggaacgcacgcctctagacttgttcaaagc
ttctcctcacatccaaacgaaatgcagttgcttccttcggagcctttcatgctactagcc
aactctgtccacgagatccacgtaggagtgcgccctctatcagttggcaacaagttcatg
tacatcaatgttgtcgacaatgagtaccaccagctgatacggtcttggctggtatgcgtg
cagtgtcgtcagcctgtgatatccaaagcctttgagctgcagttaccggtgggcggaggc
aaaggttcaaataagcgtataacatacaccaatccgtaccctcatcataaagtgtttaac
atcagatgtaatcgggacgatttgctgcagtttaaggagacacgggttcagattgatggc
ggtgagacatacggtcttggtttaagattctctccgtgtcaacaagcaggcagcgccgag
atactcatcttcatcaacgatgaacaagacaacaatgaagaaacgttcttagtcagagca
atatactcctaa
DBGET
integrated database retrieval system
