Luidia clathrata (European starfish): 117302889
Help
Entry
117302889 CDS
T10152
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
arun Luidia clathrata (European starfish)
Pathway
arun04820
Cytoskeleton in muscle cells
Brite
Glycosaminoglycan binding proteins [BR:
arun00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117302889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
117302889
NCBI-ProteinID:
XP_033642746
LinkDB
All DBs
Position
19:complement(12371054..12435583)
Genome browser
AA seq
1798 aa
AA seq
DB search
MDRTFVRCPLGMGSLVIGVYLVLLSVNAASSQGVFALPQGTVDVLEKLNFAGSRGVVGGA
EGFCDRRPGVGDAIPQADEAFSVNTDASPSLEVSKMFSGELFPEDFSILLTVRIRVPERS
KMILLSLYDINSEPKIILDIGNPAVLQYADEANGPGKKEWPRFRLNIADGEWHRIALSVN
GQTANLITDCGVTETDTLLRKTPANIRTDGIFVFGRDLLKPSRDTYFEGDIQQLLIVPDS
TAAYDQCRNYMPNCDEPMPIFKKALEPNPSPDRNGGQAGPTPGVIYDSAASASSQSDSYN
YNQPGLSSYDSQVDPNPNGGGGGGGGGGTPTYLRGPSGAKGERGETRIEYFPGPVGPAGP
RGNPGPPGFEGPRGDPGPQGEKGDQGRDGAKGMNGARGPPGVSALIPQQLMAMIAESASD
GMKGPSAAANMASIRAVLEEQRFAMRGERGPEGPEGRPGPMGLSGREGPKGDSGSLGDVG
PRGLPGMTGERGRDGKRGRFGKDGPRGVSGPPGTKGDRGYDGLPGLPGVKGSFGRHGPKG
GRGPEGEKGEMGNDGDQGEYGLPGPPGTSGQTGPRGMPGPMGMPGGIGDPGPMGPKGAMG
IAGMPGNPGMPGKAGPPGSMGPQGSMGAPGVQGPVGKPGVPGVPGTDGPPGFPGQEGPTG
AKGSDGPGGPQGLQGYAGPRGVKGVTGIRGLPGSKGSSGEDGIPGLKGDMGLRGDRGNQG
PSGPRGPEGIMGPKGEMGIIGDPGPIGVGGEKGQLGAPGMPGYPGRTGDKGDIGKEGNSG
KIGDKGSRGPSGVPGNVGDRGPRGQRGERGVSGSEGPRGQKGEEGPNGPGGIQGERGPAG
VSGSRGFPGAKGPAGPIGQDGIPGFPGPRGEAGFEGKPGTPGPAGVIGPQGPPGEKGPEG
TSGFPGGPGLPGEPGLPGESGSTGIQGTPGQPGIAGGEGPPGVQGFPGERGLPGVQGPEG
DTGEDGSSGQQGPPGAPGVQGPSGIPGPPGLQGRPGERGAEGSRGIKGERGDDGPNGPVG
RDGMPGPRGLPGPIGLTGSPGEDGDRGDTGLAGTKGSKGERGMEGPMGLLGERGPRGDPG
LPGEDGDTGVPGEMGLRGPKGEEGPSGAPGSAGPIGLQGLPGVSGPKGDTGDPGPTGAPG
RMGLPGKRGTPGGEGGQGLPGPRGDNGSPGQKGEKGSVGIPGRSGRDGPQGAKGDAGNKG
EPGSPGFPGPNGPPGPEGPQGPKGNPGPIGFPGEPGDPGTPGQPGVPGDPGEDGEDGDPG
RPGPQGPPGDIGHTGPRGKPGKPGLNGAPGEQGPKGDSGDMGPPGIRGDPGPPGIPGEPG
PQGPQGIRGLSGPEGDPGEQGPQGQGGPQGPMGPEGPRGLTGDPGPIGPKGDIGLMGLTG
EIGDPGEKGDKGEQGESGPRGPRGEQGVEGPQGPMGPEGPPGVRGVPGPPGPSGIRGDYG
PKGDLGPAGPPGPPGPEASAEYLQALLDQGILNIRPDLYPGFYPDEFPGGTYAPFTAAPN
EGGGGGPGGPDSSSSYTGSVKRRRREAGDDPNAAGTDFEDNLIPENAEDYFYFDYGELPE
AYMEALVQLFTSLRALKEEMEQMKNPIGTIKNPARTCKDLYLSHKDFKDGHYWIDPNQGC
TKDALEVFCNMTAEGETCIYPDQDESESEDFIAAFDDVMRGYRKAKPGAWFSDTKVDPLT
YKSISTVQLTFLRLLSTQATQNFTYMCSRSAGWFDKSLGSFDNAIKLQGANEEEFAYGST
MEPEVLLDNCKDKPGKGETVLQITTTKLQQLPIMDFAARDFGTKSQRFGYKAGPVCFN
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atggatcggacttttgtgcgatgcccgcttgggatgggcagcctggtaattggcgtttat
ctagttctcttatcagtaaatgcagcttcgtctcaaggagtctttgcactaccacaaggc
acagtagacgtgttagaaaagcttaactttgccggttcacgaggagtagtaggtggggcg
gagggattctgtgaccgccgcccgggggtaggtgatgctatcccccaggccgatgaggca
ttcagcgtcaacaccgacgccagtccaagcttggaggtttccaagatgttttcaggggaa
ctctttccagaggatttttcgatacttttaaccgtgagaatacgcgttccagaacggtcg
aaaatgattctactctcgctgtatgacataaacagcgagcccaaaatcatcttggatatc
ggcaacccagcggttttacaatatgctgacgaagccaatggtcctggcaagaaggaatgg
ccccggttcaggctcaacattgccgatggcgaatggcatcggatagctttgagtgtgaat
ggacaaactgcaaatcttataactgattgtggagtgacagaaactgataccttactgagg
aaaacaccagcgaatataagaacggatggaatatttgtttttggccgagatttactcaag
ccttcacgagacacctattttgagggtgatattcaacaacttcttattgtaccagactct
actgcagcttacgatcaatgccggaactacatgccaaactgtgatgaacctatgccaatt
tttaaaaaggccctcgagccgaacccgtctccagatagaaatggagggcaagctggacca
acacccggtgttatttatgacagtgcagcgtcagcatcctcacaatcagattcctataac
tacaatcaacctggactgagttcctatgacagtcaggtggatcctaaccctaatggtggg
ggtgggggtggtggtggaggaggaactccaacttacttgcgaggtccatctggtgcaaaa
ggagagcgcggtgaaacaagaattgaatatttcccaggaccagtcggaccagcaggaccc
aggggaaacccaggacctccaggatttgaaggaccaagaggggatccaggaccccaagga
gaaaagggtgatcagggtagggatggagcaaaaggaatgaatggtgcccgtggccctcca
ggagttagcgctttaataccgcaacaactaatggcgatgatagcagaatctgcttctgac
ggcatgaagggaccatcggcagctgctaatatggcatccattcgggcagtcctagaagaa
caaaggtttgccatgaggggagagagaggcccagaaggacctgaaggtaggccaggacca
atgggtctatcaggccgagagggtcctaaaggagattcaggatcccttggtgatgtaggt
cctcgtggattacccggtatgactggagaacgtggcagagacggtaaaaggggacgcttt
ggaaaagatggaccacgtggagttagcggaccaccgggtaccaagggtgatcgaggatac
gatggtttaccaggacttccaggtgtcaaaggatcatttggaagacatggaccaaagggc
gggagaggaccagagggggagaagggagaaatgggaaatgatggagatcaaggagaatat
ggtttgcctggaccaccaggaaccagcggtcaaactggaccacgaggaatgcctggccct
atgggtatgcctggtggtattggtgatccaggtcctatgggacccaaaggtgcaatgggt
attgcaggtatgccaggaaaccctggtatgcccggaaaggctggaccacctggctcgatg
ggaccccaaggcagtatgggggcacctggtgtacaaggcccagtgggtaagcctggtgtt
ccaggagtaccaggtactgatgggccgccgggtttcccaggccaagagggaccaaccgga
gccaaaggaagcgatggacctggtggaccacagggtcttcaagggtacgcagggcctaga
ggagtcaagggtgtaaccggtatcagaggtctcccagggtcaaagggctcttcgggtgag
gatggcatacctggattgaaaggagatatgggtcttagaggagacaggggtaatcaaggg
ccatcgggtcctagagggccagagggcatcatgggacccaagggagaaatgggaataatt
ggtgatccaggaccaatcggtgttggtggtgaaaagggtcaacttggagcacctggaatg
cctggttatcctggaagaacaggggacaagggagacatcggtaaagaaggaaattcagga
aaaattggagacaaaggatccaggggaccgtcaggtgtaccagggaatgtaggggatcgt
ggaccgagaggacaaagaggtgaacgaggtgtttctggaagtgagggaccacgtggacaa
aagggtgaagaaggacccaacggacctggcggaattcaaggtgaaaggggtcctgctgga
gtgtctggaagccgtgggttcccaggagctaaaggacccgcgggaccaatcggtcaggat
ggtataccaggcttccctggcccacgtggagaggcaggatttgagggtaaaccaggaaca
ccaggacctgcaggtgttattggtccacagggtccaccaggagagaagggtccagaaggt
actagtggattcccaggaggccctggactgccgggtgagcctggtctacctggtgaatct
ggttctacaggaattcagggcaccccaggccagcctggaatagcgggaggtgaaggacct
ccaggtgtacaaggcttccctggagaaagaggtcttcctggtgttcagggaccagaagga
gacacaggtgaggatggttcatcaggacaacaaggaccaccaggtgcccctggcgttcaa
gggccttccggtattccaggaccaccaggattacagggtcgtcctggagaaagaggagca
gaaggatccagaggaatcaagggtgaaaggggagacgatggaccaaatggacctgttggt
cgagatggtatgccaggaccaaggggtctaccaggaccaataggattaaccggatcacct
ggtgaagatggagatagaggagacaccggattagcaggaactaagggatctaagggagaa
cgaggcatggagggaccaatgggattgcttggggagagagggcctcgtggtgacccaggc
ttaccaggagaagatggtgatacgggcgtgccaggcgagatgggtcttagaggccccaag
ggagaagaaggaccatcaggagccccagggagtgccggaccaatcggcttacagggtctt
cctggcgttagtggacctaaaggagatactggtgatcctggtccaactggtgctcctggt
agaatgggactacctggaaaacgaggaaccccaggaggagagggcggacaaggcttacca
ggaccaagaggggacaacggatctcccggacaaaagggtgagaagggatctgttgggata
ccaggccgttcaggaagagatggtccacagggagctaagggagacgcaggaaacaaagga
gagccaggatcaccaggattccccggaccaaatggtccaccaggacctgaaggacctcaa
ggacccaagggtaacccgggcccaattggatttccaggtgaaccaggagacccaggcaca
ccaggacaacccggagtaccaggagacccaggggaggatggagaagatggtgatccagga
cgcccgggacctcaaggtccacctggagatattggacatactggacctcgagggaaaccg
ggtaaacctggtctaaatggagctcctggtgagcaaggccctaagggtgactcaggagac
atgggacccccaggtatccgaggagatccaggaccacctggcatacccggtgagccagga
ccccagggaccccagggcatcagaggtctctcaggacctgagggtgacccaggagagcaa
ggaccacaaggacaaggaggtccacaaggaccaatgggtccagagggtccacgtggctta
acaggtgatccgggtccaattggaccaaagggtgatattggtttgatgggattgaccgga
gaaataggagaccctggggagaagggtgataagggagaacaaggtgaatctggaccaaga
ggacctcgaggagaacagggtgttgaaggaccacaaggacctatgggacccgaaggacca
cctggtgttcggggtgtccctggcccccctggaccatctggtatccgaggtgactatgga
ccaaagggtgatctaggacccgcgggacctccaggacctccaggaccagaagcaagtgct
gagtacctccaagctctactcgaccagggcatcttaaacatccgcccagacctgtaccct
ggtttctaccctgatgagttcccaggaggtacctatgcacccttcactgctgcacctaac
gagggaggaggtggaggacctggtggaccggatagtagcagcagctacacaggctcagtc
aagagaagaagacgagaagctggcgatgatcccaatgctgctggtactgactttgaagac
aacctaattccggaaaatgctgaggactacttttattttgattacggagaattaccagaa
gcctacatggaagccttggttcaacttttcacctccctgcgtgctttgaaagaagaaatg
gaacagatgaagaacccaatcggaaccatcaaaaacccagccaggacatgcaaagatctt
taccttagccacaaagacttcaaggatggtcattactggattgatcccaatcaggggtgt
actaaggatgccttggaggtcttctgtaacatgacggctgaaggagagacgtgtatctac
cctgaccaggatgagagcgagtctgaggatttcatcgcagcgtttgatgacgtgatgcgg
ggttaccgaaaggctaaacctggtgcatggttcagtgacactaaagtggacccgttgacc
tacaagagtattagcaccgtacagctgaccttcctacgcctcctcagcacccaagctaca
cagaatttcacctacatgtgcagccgtagtgctggttggttcgataagtcactgggttcg
tttgataacgccatcaaactacagggagctaatgaggaggagtttgcgtatggatcaacc
atggaacctgaagtccttctagataattgcaaggacaagcctggaaagggagagactgtc
ctacaaatcaccaccactaagctgcaacagcttccaattatggactttgcagctcgtgac
ttcggaacaaagtctcaaagatttggctacaaggcgggtcccgtgtgctttaactaa
DBGET
integrated database retrieval system
