Luidia clathrata (European starfish): 117302942
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Entry
117302942 CDS
T10152
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03013
Nucleocytoplasmic transport
arun03015
mRNA surveillance pathway
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117302942
09122 Translation
03013 Nucleocytoplasmic transport
117302942
03015 mRNA surveillance pathway
117302942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117302942
03041 Spliceosome [BR:
arun03041
]
117302942
Enzymes [BR:
arun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117302942
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117302942
Spliceosome [BR:
arun03041
]
Complex C
Other components
EJC/TREX
117302942
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117302942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117302942
NCBI-ProteinID:
XP_033642832
LinkDB
All DBs
Position
19:9781236..9792823
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AA seq
435 aa
AA seq
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MADNDVDQELLDYEEEEHDTTQEAAGDAPAQQVAKKDVKGTYVSIHSSGFRDFLLKPELL
RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQLEPVEGQIGVL
VMCHTRELAYQIKKEYDRFSKYMPSMKEKVAVFFGGLNIQKDIQKLKTDPPHIVVGTPGR
LLALCRNKSLNLKNVKHFILDECDKMLEQLDMRKDVQEIFRTTPHEKQVMMFSATLSKEI
RPVCKKFMQDPMEVYVDDETKLTLHGLMQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFIR
SVQRCVALCELLVEQNFPAISIHRLMPQATRLQNYKLFKNFEKRILVATNLFGRGMDIER
VNIVFNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNITELP
EEIDMASYIEPDRFQ
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgatgtcgatcaagagcttttggattacgaagaagaggaacacgacacc
acccaggaggctgctggtgatgctcccgcgcaacaagtagccaagaaagatgtgaaagga
acctacgtgtccattcacagctcggggttcagagatttcttgttgaagccagagttgctg
cgggcaattgttgactgtggttttgaacatccatctgaggttcaacatgagtgcattcca
caagccatccttggtatggacgtcctttgccaggccaagagtggtatgggaaagacggca
gtctttgttttgtcaactcttcaacagcttgagccagtagaaggacagatcggtgtgtta
gttatgtgccacactcgtgagttggcctaccagatcaagaaagagtacgaccgcttctcc
aagtacatgccgtccatgaaggagaaggtagccgtgttcttcggcggtctcaacatccag
aaggacatacagaagctgaagacggatccccctcacatcgtagtcggcacaccaggacgt
ctgttggcgctctgccgtaacaagtcgctcaatctcaagaatgtcaagcacttcatcctt
gatgaatgcgacaagatgctggaacagctagacatgagaaaagacgtccaagagatcttt
cgcaccaccccccacgagaaacaagtcatgatgttcagcgccacactcagcaaggaaatc
cggccagtctgcaagaagttcatgcaagacccaatggaagtgtacgtcgatgacgagact
aagctaactctccacggtctgatgcaatactacgtcaaactgaaggacaacgagaagaac
cgcaagctgtttgatctcctcgatgtgcttgagttcaaccaggttgtcatcttcatcaga
agtgttcaacgctgtgttgctctgtgtgaactcctggtggagcagaacttccctgccatc
agtatccatcgcttgatgccacaagccacaagattgcaaaactacaagttgttcaagaac
tttgagaagcgcatcttggtcgctaccaacctgttcggacgcggtatggacatagagaga
gtgaacattgtgttcaactacgacatgcctgaaaactctgacacctaccttcacagggtc
gcccgtgctggtcgctttggcacgaagggtttagccatcaccttcgtctccgatgagaat
gatgctaaaattctcaacgacgttcaggacagatttgaagtcaacatcactgaattgccc
gaagaaatcgacatggcctcttacattgaacctgacaggttccagtga
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