Luidia clathrata (European starfish): 117303280
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Entry
117303280 CDS
T10152
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117303280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arun03041
]
117303280
Spliceosome [BR:
arun03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117303280
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
PRP4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
Ge1_WD40
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD40_like
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
117303280
NCBI-ProteinID:
XP_033643330
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Position
19:3895414..3905881
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AA seq
496 aa
AA seq
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MSDDEATPVFKRQKIHYGTLEDRLREETSKGSFQAGTEAGNISVSSGDTFDLEEHVSEQR
LELLAEFERRKKLRQITVSTDDAVVKAQLRQRGAPICLFGEDKADRRERLRQLLAVAGDD
DFSRHQIEEIAKEKKKEEDQKTWYHEGPDSLMKARLWIAEYSLPRAEKRIQESRLDKNIP
ESKRNAKTQELHRHLRSLTAIGSQIGDTRPISYCQFSPNSQILATASWSGLIKLWSVPDL
KGIRTLRGHNHNIGAVVFHPKATVSLDDQACCMASCAADGSVKLWNLVSDEPVANIEGHA
ARVARLAYHPSGRFLGTTCFDMSWRLWDLEAQDEILHQEGHSRSVYSIGFQCDGSLCATG
GMDSFGRIWDLRTGRCIMFMEGHLKSVLDVSFSPNGYQLATASEDHSVKLWDLRQRKCLY
TIPAHNNIVSGVKFQGDYLISCSYDNTAKVWAHPGWSPLMTLAGHDSKIMSVDISTNEQY
IATASFDRTFKLWASE
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgacgaggctacccccgtctttaagaggcagaaaattcattatggcacactg
gaggacaggctaagagaggaaacttcaaagggatccttccaggccggaaccgaagctggc
aacattagcgtctcgtctggtgacacctttgaccttgaggagcacgtcagcgaacagcga
ctggagcttcttgctgaatttgaaagaagaaaaaagcttcgtcagatcactgtttctacc
gatgatgcagtggttaaagctcagctacgacagagaggggcaccaatatgcttgtttgga
gaggataaggccgacagaagggagaggttgcgtcaattgcttgctgtcgctggagacgat
gatttcagccgacatcaaattgaagaaattgcgaaagagaaaaagaaagaggaggaccaa
aagacctggtaccacgagggaccggatagtctgatgaaagctagactatggattgcagag
tattcattaccaagggcagagaagaggatacaggaatccagactcgataagaatattcca
gaatccaagaggaatgccaagactcaagagcttcatcgtcatcttaggtccctgacagct
atagggagtcaaatcggcgacacacgacccatctcgtactgccagttcagtccaaattct
cagatcttagcaactgcatcgtggagtggattaatcaagttatggtcagttccagacctg
aaaggaatccgaacactccgaggtcataatcataacatcggggccgttgtattccaccct
aaagctacggtatccctggatgatcaagcatgctgtatggcatcctgtgcagctgatggt
agcgttaaactttggaatctagtcagtgatgagccagttgccaacatagagggccatgca
gctagagtagctcgtctcgcctaccatccatccgggagatttctaggaacaacatgtttt
gacatgtcatggcgcttgtgggacctcgaagcacaagatgaaattcttcaccaagaaggc
catagcagatcagtatattccattggattccagtgtgatggttcactgtgtgctaccggt
ggaatggattcatttggtcgcatttgggatcttagaacaggacgatgcataatgttcatg
gaaggccatctcaagtctgtcctggatgtcagcttctccccaaatgggtatcaattggca
acagcgagtgaggatcattcggtcaagttgtgggatctgagacaacggaaatgtctttac
accattccagctcataataacatcgtgtcaggggtcaagtttcaaggggactacttaatc
agctgttcctatgacaacacagcaaaggtatgggcacatcccggctggtcacctcttatg
acccttgctggtcacgacagcaagatcatgtcagtagatatatcaaccaatgaacagtac
atagcaactgcgtcattcgaccgaaccttcaagctctgggcgtcagaataa
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