Luidia clathrata (European starfish): 117303429
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Entry
117303429 CDS
T10152
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117303429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117303429
03041 Spliceosome [BR:
arun03041
]
117303429
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117303429
Spliceosome [BR:
arun03041
]
Complex B
Other components
Prp19-related factors
117303429
Complex C
117303429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21
Mad3_BUB1_I
RPN7
ARM_TT21_C
TPR_1
TPS
DHR-2_Lobe_A
TFIIA
Motif
Other DBs
NCBI-GeneID:
117303429
NCBI-ProteinID:
XP_033643513
LinkDB
All DBs
Position
19:1440573..1452193
Genome browser
AA seq
850 aa
AA seq
DB search
MPISEQQSEVIFEEDDLPYEEEILRNPYAVKCWLRYVEHKGTGAPGPLNLIYERSLKELP
GSYKLWYNYLKVRRKHVKGRCIIDPGYEDVNNAFERALVFMHKMPRIWLDYCQFLMDQRK
ISRVRRTFDRALRALPISQHHRIWPLYLKFVRMYPLHETAVRVYRRYLKLFPENAEKYIE
YLVSIDRLDEAAVRMADIVNNANFVSKVGKSNHQLWHDLCNLICKNPTKVTSLKVDPIIR
GGIKRFTDERGKLWCSLADYYIRSGHFEKARDIYEEAIQTVTTVRDFTQVFDAYAQFEES
MISAKMETTSELGHAEEDDTDLELRLERYEDLMDRRPLLLNSVLLRQNPHNVHEWHKRVN
LFEGKPKEIINTYTEAVQTVDANQATGKLYTLWVEFAKYYEKHGQIPEARLIFEKGTKVS
YVKVDDLGAVWCEWAEMELRHENFSEALVLLRRATATPKNKASYYDKSEPVQNRLYKNLK
VWSMYADLEESFGTFKSTKAVYDRMVDLRIATPQIIINYGMFLEEHNYYEEAFKAYEKGI
GLFKWPNVFDMWNTYLTKFIERYGGKKLERARDLFEQCLDGCPKKFAKGIFLLYAKMEEN
YGLARHAMAVYERATEGVLPEEQNEMFNIYIKRAAEVYGVTHTRSIYEKAIEVLPEEQSR
SMCLRFADLERKLGEIDRARAVYAHCSQMCDPRTTAAFWQTWKEFEIKHGNEDTVREMLR
IKRSVQATFNTQVNFMSAQMLAASKTPSGTVSDLGSGGLDDMKLLEQRAQVMAAEAEADK
PKSKKDILFVRGNAKASDADLAEAARTTNPEEINIDIDDDDDESGDDVDEVQVETQAIPT
EVYGNIQQQE
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcctatttcggaacagcaatcagaagtcattttcgaggaggatgaccttccatatgag
gaagagatcttgcgtaatccgtacgccgtcaagtgctggcttcgttacgtcgagcacaaa
ggcactggagctcccgggcctctcaaccttatctatgagaggtcactgaaagagttgcct
ggaagttacaaactttggtacaactacctgaaggtcagacggaagcatgtcaaaggtcgc
tgcatcattgaccctggctatgaagacgtcaacaatgcctttgagagagctttggtgttc
atgcacaagatgcctcgtatctggctggactactgccagttcctcatggaccagcgcaaa
atctcccgcgtacgacggacatttgacagggcattgagggcgctacccatcagccagcac
catcgcatctggccactctacctcaaatttgtccggatgtaccccctccatgaaacggct
gttcgggtttacagaagatacctaaagctatttcctgagaatgctgagaagtatatcgag
tacttggtgtccatcgacagattggacgaagcagcggtcagaatggctgacattgtcaac
aatgctaactttgtgtcaaaggttggcaagtcaaaccatcagttgtggcacgatctatgt
aatctcatctgcaagaatcccaccaaggtgacgtctctgaaggtcgatccaatcatccga
ggtggcatcaaacgattcacagatgagcgaggaaaactctggtgctccctggccgactac
tacatcaggagtggccattttgaaaaggcccgagatatttatgaggaggcgatacagaca
gtcacaactgtcagagatttcactcaggtatttgatgcgtacgcccagtttgaggagagc
atgatcagcgcaaagatggaaaccacgtctgagttgggacatgctgaggaagatgataca
gacctcgagctacgcttagagcgctacgaagacctgatggaccggcgccctctacttttg
aacagcgtcctgcttcgacaaaacccgcacaatgtccacgagtggcacaaacgggtcaat
ctgtttgaagggaaaccgaaggagattattaatacatacaccgaagcagttcagaccgtg
gatgcaaaccaggcaactggtaaactgtacacgttatgggtggagtttgcaaagtactat
gagaagcatggacagatacctgaggcgcggctgatttttgagaagggtacaaaggtcagt
tatgtcaaagtggatgacctcggagcagtgtggtgtgaatgggcagagatggagctcagg
catgagaatttcagtgaagctttagtactactgaggagagcaacagcaacgccaaagaac
aaagcatcctactatgacaagagtgagcctgtacagaaccgactctacaagaacctgaaa
gtgtggtccatgtatgctgatcttgaagaaagttttggaaccttcaagagcacaaaagca
gtgtacgaccgaatggttgatctgagaatcgccacaccccagatcatcatcaactatggc
atgtttctggaagagcataactactatgaggaagcctttaaggcatacgagaagggcatt
ggactgtttaagtggccaaatgtttttgacatgtggaacacatacttgaccaaattcatc
gagcgatatggtggcaaaaagttggaaagagccagagatctgtttgagcagtgcttggac
ggttgccccaagaaatttgctaagggaatttttctgctttacgccaagatggaggagaac
tatggtctggccagacacgctatggctgtttacgagcgggcaacagagggcgtgcttcct
gaagaacaaaatgagatgttcaacatctacatcaagagagctgccgaggtgtacggtgtg
acgcacacccgctccatctatgagaaggccatcgaggtcctacctgaggaacagtctagg
agtatgtgtctacgttttgctgatctagaacggaagcttggggagattgaccgagccagg
gctgtctacgctcactgctcacagatgtgtgaccccagaacaactgcagctttctggcaa
acgtggaaagagtttgagattaaacatggaaatgaagacacagtacgagagatgctaaga
atcaaacgcagtgtccaggcaactttcaacacacaggtgaacttcatgtcggctcagatg
ttagctgcatccaaaaccccatctggtacagtttctgatcttggatctggtggcttggat
gatatgaagttattggaacaacgagctcaagttatggccgccgaggccgaagctgataaa
cctaaatcaaagaaagatattctgtttgtcaggggaaacgccaaagccagcgatgccgat
ctggctgaagcagcacggacaaccaaccccgaggagatcaatatcgacatcgacgatgat
gatgatgaaagtggggacgatgtagatgaagtacaagtggagacccaagccatcccaacc
gaggtatatggaaacatccagcaacaagagtaa
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