Luidia clathrata (European starfish): 117303793
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Entry
117303793 CDS
T10152
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117303793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arun03041
]
117303793
Enzymes [BR:
arun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117303793
Spliceosome [BR:
arun03041
]
Complex A
U2 snRNP components
U2 related factors
117303793
Complex B
117303793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117303793
NCBI-ProteinID:
XP_033644046
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All DBs
Position
20:complement(2731552..2754162)
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AA seq
1226 aa
AA seq
DB search
MPLKNRHYRRRSRSTSNSSTERSSRSKKKSKNRRKSRSSSSGSSHSSASPDRSSPSNKKS
SKSSKGRSRDSRSKSKDREREKERERRREKERERERERERDRERERERERERERERDRER
ERERERERERERNRKRRSRRSRSRSKDRRRSRSRSKDRKRSRSRSQDRKKRRSRSRSKHR
GSRTQSRSPNRSNKRSDSRSKDKDAVKVEAASVEVKQEAGVRNGKGTEVGQDERSEVKEE
GDARSKVKEEKGLPLEQKRLEEEMQRRRERIERWRQERKKTVDMTAMKAEALQQAEALAQ
STGKKWSLEDDDDEADDEAEDEEMETSEPTPPVKIDPETLIKEESKNKLDEAQAKIEEAR
RKMEEKIKAKELKKEQEAAAAPKEEEVDDNVDPLDAFMMSVNEEVKKINQTDRKRTTGSE
ATAAVGADVQQADGQQAVKKGMVSMLTGVAVKKKVIPAPAVDKLIKGELMENDQDAMEYS
SEDEKESNLMDQVAALEQKKKKELATVDHSKIDYTPFRKDFYVEVPELAKMTPEEADVKR
ADLEGIKVRGKGCPKPIDAWVQCGVANKVLSVLKKNKYEKPTPIQAQAIPAVMSGRDLIG
IAKTGSGKTIAFLLPMFRHIMDQDPLEMNEGAISVILTPTRELAMQIYRECKKFTKPLGL
RAICVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRCTYLVLDEADRM
FDMGFEPQVMKIIDSIRPDRQTVLFSATFPRAMEALARRILTKPIEVTVGGRSVVCSDIE
QHVLILEEEQKFLKLLELLGIYQEQGSVLVFVERQESADLLLKDLMKASYPVLALHGGID
QYDRDSIIQDFKTGNVSLMVATSVAARGLDVKQLILVINYDCPNHYEDYVHRVGRTGRAG
NKGFAFTFIMPDQQKYCGDLIKALELSEQKPPDDLMAMWTEYCDQQKAEGKKVMRNSGFS
GKGFKFDDTERELANEKKKLQKAALGLQDSDEEDAGMDIDDKIENMFASKRRVKEVSADE
ISVSLPNPTLVKPVDTTNINQANLNLAKKMAERINRNLENVKQVSVVQQAAQAVMQGNSL
VAQAVSGRTIAEQLAEKLNAKLNYIPKGVDEEIVVEKEKQVFRKYEEELEINDFPQTARW
KVTSKENLAQIQEYSEAGITIRGTYFLPGKEPKEAEGERKLYLAIESSNELSVQKAKAEI
TRLIREELVRLQNSYQPINKGRYKVL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcaaaaatagacactaccgaagacgctcaaggtccacttcaaactcaagtaca
gagcgttccagccgttcaaagaagaaatcgaaaaatcgtcggaagtcccgctcgagttcc
tctggttcgtcccacagctcagccagccctgaccgatcaagtccgagtaacaagaaaagc
tccaaaagcagcaaaggcagatctagagattcacgctccaagtctaaagatcgggaacgc
gagaaagaacgagaaaggcgacgggagaaggagagggaaagagagcgcgaacgagagcgt
gatcgcgagagggaacgggaacgtgaaagggaacgagaacgtgaaagagatcgcgagaga
gaacgagaaagggagcgggagagggagcgagaaaggaatcgaaaacgaagatccaggaga
tctcgttccagaagtaaagatcgtagacgttcacgctcgcgcagtaaagacagaaagcgg
tctcggtcgcgaagccaagaccgtaagaaacgacgatcgcgcagccgcagcaagcatcgt
ggaagtcgtacgcagtcgaggagtccaaacagaagcaacaagcgttctgactccagaagt
aaggacaaggacgctgtgaaggtcgaagcagcttcagttgaggtcaaacaggaggctggt
gtgcgaaatggaaagggtaccgaggttgggcaggatgaaaggtcagaggtcaaggaggag
ggagatgcaaggtcaaaggtcaaagaagagaaaggactgcctcttgagcaaaagcgttta
gaagaggagatgcagagaaggagagagcgcatcgaacgctggcgacaagaacgcaagaag
actgtggatatgaccgccatgaaggcagaggctctacaacaagcggaggctctggctcaa
tcgaccggcaagaaatggagcttagaggatgacgatgatgaggctgatgatgaggctgag
gatgaagaaatggaaacctccgagcccacacctccagtaaagatcgaccctgaaaccctg
atcaaagaagagtcaaagaacaaactcgacgaagcccaggcgaagatcgaggaagctcgt
cgcaagatggaggagaagattaaagccaaggagttgaagaaggaacaggaggcggcagcg
gcacccaaagaggaagaggttgatgacaatgtggaccctctggatgctttcatgatgagt
gtcaacgaggaagtcaagaagatcaaccagaccgataggaagaggacgacggggagtgaa
gcgacggccgcggtgggagctgatgtacagcaagccgatggacagcaagcggttaagaag
ggaatggtgagcatgttgactggagttgccgtcaagaagaaagttatacctgcacctgct
gtggataaactcatcaagggagaactcatggagaatgaccaggatgctatggaatactcc
tctgaagacgagaaggagagtaacttaatggatcaagtagctgccttagaacagaagaag
aagaaagagttggccactgtggatcactccaagattgattacacacccttccgtaaagac
ttctatgttgaggtcccggagctcgccaagatgactccagaagaggctgatgtgaagaga
gcagacctagaagggatcaaagtgagaggcaaaggttgtcccaaacccatagacgcatgg
gtgcagtgtggagtagccaacaaggtcctctctgtcctaaagaagaataaatatgagaag
cctacaccgatccaagcgcaggccatcccggcggtgatgtctggtcgcgatctcatcggc
attgccaagaccggcagcggtaagaccatagcgtttctactgccgatgttcagacacatt
atggatcaagatccgctggagatgaacgaaggagccatctctgtgattttgacccctacc
cgagagcttgccatgcagatctacagggaatgtaagaagtttaccaagccgctcggactg
agggctatctgtgtgtatggaggtacgggaatcagtgagcagatcgctgaactgaagagg
ggagctgagataattgtttgtacaccgggaaggatgattgacatgcttggcgctaataac
ggtcgagtgaccaaccttcgacgatgtacgtaccttgttttagatgaagctgatagaatg
tttgacatgggctttgaaccacaggtgatgaagattattgatagtatccgaccagatcgg
cagaccgttctcttctcagcaaccttccctcgagcaatggaggcgttggctcgtcgtata
ttgaccaaacccatcgaggtgaccgtggggggccgtagtgtcgtgtgttcggacattgag
caacatgtgttgatcttagaagaggagcagaaattcctgaagttgttggagcttcttggg
atctaccaggagcagggaagcgtcttggtgttcgtagagagacaagagtccgctgattta
ctccttaaggacctgatgaaagcttcttatcccgttctggcactacacggagggatcgat
cagtatgaccgagactctattatacaggatttcaagactggtaatgtgtcgttgatggtt
gctacttctgtcgctgcccgtggtctggacgtaaagcagctgatactagtcatcaactat
gactgccctaatcactatgaagattatgtacacagagttggccggacgggtcgtgcgggc
aataaaggttttgcattcaccttcatcatgccggatcagcagaaatactgcggtgatctc
atcaaagcgctggagctgagcgaacagaaacctcccgatgatctcatggctatgtggact
gagtactgtgaccagcagaaagctgaagggaagaaggtgatgcgtaacagtggcttcagt
gggaaaggcttcaagtttgacgacactgagcgtgaattggccaatgagaagaagaaactc
cagaaggccgccctcggactccaagactccgatgaagaggacgctggaatggacattgac
gacaagattgagaacatgtttgcgtccaagcgtcgcgttaaggaggtatcagccgatgag
atctcggtttccttgcctaatccgacgttagtcaagccagtcgacacaacgaatatcaac
caagctaatctcaacttggctaagaagatggccgagaggattaaccgtaatctagagaat
gtgaaacaagtcagcgtggtccagcaagctgcacaagccgtcatgcagggtaactcactg
gttgctcaagcggtctcaggtcgtacaatagcggagcagcttgctgagaagttgaatgcc
aaactgaactacatccctaaaggtgtggatgaagagattgtggtcgagaaagagaaacaa
gtcttcagaaagtacgaagaggaacttgagatcaacgacttcccacagacggcgagatgg
aaagtcacctccaaggagaatcttgctcagatccaggaatacagcgaggctggaatcaca
atcagagggacctacttccttcctggtaaagaacctaaggaggctgagggagagaggaaa
ctctatctagctatcgagagttcaaatgaactttcagtgcagaaggcaaaagctgaaatt
accagactcatcagggaagagcttgtcagactgcaaaattcttaccaaccaatcaacaag
ggacgttacaaagtcttatga
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integrated database retrieval system
