Luidia clathrata (European starfish): 117306959
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Entry
117306959 CDS
T10152
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03018
RNA degradation
arun03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117306959
09123 Folding, sorting and degradation
03018 RNA degradation
117306959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117306959
03041 Spliceosome [BR:
arun03041
]
117306959
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117306959
mRNA degradation factors
5'-3' decay
Lsm complex
117306959
Spliceosome [BR:
arun03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117306959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
117306959
NCBI-ProteinID:
XP_033647451
LinkDB
All DBs
Position
2:18414636..18417484
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AA seq
96 aa
AA seq
DB search
MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYSNTAGVEQVVLGLY
IIRGDNIAIIGEIDDDTDSALDLTNVKAEPLNPVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggactggagagttatataaaccacacagtttctgtcattaccaacgatggc
cgacagatagtgggaacgttaaaaggttttgatcagacaattaatctgatcctggatgag
agtcacgagagagtttacagcaacacggcaggcgtggagcaggtggtacttggtctttac
atcatcagaggagacaacattgcgatcattggtgaaatagatgacgatacagacagcgcc
ttggacctgaccaatgtgaaagcagagcctctcaaccctgttgtgcactga
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