Luidia clathrata (European starfish): 117307285
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Entry
117307285 CDS
T10152
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
arun Luidia clathrata (European starfish)
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arun03041
]
117307285
Enzymes [BR:
arun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117307285
Spliceosome [BR:
arun03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
117307285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
117307285
NCBI-ProteinID:
XP_033647894
LinkDB
All DBs
Position
2:complement(1138928..1148983)
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AA seq
1183 aa
AA seq
DB search
MSKTAHDYASKDRTSDVLNVENVNIDFASLLLSGDVLKGLSLAGFERPSPIQLKAIPIGR
CGLDLIVQAKAGTGKTCVFSVIILESLDLQCGNVQALVLTPTREIATQVQGVIQAIGGCL
QGLRCHTFIGGTLFGPDRQKLKKCHVAVGTPGRVKQLIEYDAMPTDGIRLFVLDEADKLL
DEKFQDQINWIYNRLPVSKQMLALSATYPEALAKSLTTYMRDPTFVRLNPRHLALKGIKQ
FYKVVPGHGLYHKAFEIKVNHLLQLLTQMSFSQCLVFSNLSSRAQNLSDILCENGWPSTC
ISGNQDQTHRLNAMSMLKTFQCRVLISTDLTARGIDAENVNLIVNLDVPSDGKTYLHRIG
RAGRFGSKGVAVTLASEGNEESLLRNIQRQCRVKLRVLPDPVPSDLVNSIDVIVNELDVT
ANSGSSVTCDGNDTENISDDNKFEETDESQSEINDYEHSKTLERAPSCERAREDFGPMSL
NGPAGNIGKNPESNFAVKPPLKSHDTTPSTFTMSGINNHSIPFNIRSPINFKIPSLAEKV
GRRSQQDTWTWQKATADFEQFMSGCRECCDVTSHLQDDGFRERYRNAGLVQTVVALSDPG
GDVVIPSQSEEPGSDNSGTNQMKKDSLLSFNAETLSQEGVNPKSLRSITSSHNATTDDKG
GNENDVGVTSKGTVTNVRSIGRGYVNGGTADVTLVGTLNMSNDFAVPSNELGDEVLAGTS
SLYNAVTEGEKIYHSYRTASESKDDVDIVQQEDDKRLKPFGLSTATSKTKDDGDTPFQEK
EEEMTKRISSDFRVADSPSMASSISENDFKIAYEEDDRINAVFVPINHSLANSRERNVSA
ESAVSVAVQEGDRCEKNDQMSMKTETSEMKEKVCFSWRPSQDFHSSLVPENTDGFSAANN
SDSSECDDATEEPLVVDGIRTKMHSAPMHQTSTSLPEQNVSNHIPETVSVRPWHIRQRNP
TEAVRSKNCVDKTAPSQKTFSPLPAVKRSICGKSQGSGCKPTWTKPTRVTSNAPGRTRTS
KDPLQTDSVDSSDKTCPDESNLGADPIWQSYTQYLKPESVAIDSDVGSTDSGSDDVSSAE
SQDSPDDDLSSEGSGDNKPQQTRHPDYRYDSAIAHGWWLPSPYELQPSASYYGVPDYTSF
TTPNQVDHHNQYIPPGFHQEDYYNGAYNGMYNTQPHHYNYQNS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaacggcacacgattacgcttcgaaagaccgcactagcgatgttttaaatgtc
gagaatgtcaacattgattttgcatcgttgttgttgtctggagacgttttgaaaggcctg
tcacttgcgggttttgagcgtccgtcaccaatccagttgaaagcaatacccattgggaga
tgtggccttgatttgattgtacaagctaaagcaggaacggggaagacatgtgttttcagc
gtgataatcttggagagtctggatcttcagtgtgggaatgttcaagctcttgtcttgact
ccaacacgagagattgctacacaggtccaaggtgttatacaggccattgggggatgtttg
caaggtctaagatgtcacacgttcattggagggacattatttgggcctgatcgtcaaaag
ctgaagaaatgccatgtggctgttggcacaccaggacgagtgaagcaattgattgaatat
gatgccatgccaactgacggcattcgactctttgtcctggatgaggccgataaactattg
gatgagaagtttcaagaccaaatcaactggatatataaccgcttaccagtcagcaagcag
atgttggccctgtcagcaacataccctgaagcattagctaagagcttgactacctacatg
agagatccaacatttgtacgactaaaccctaggcatctggctcttaaaggcatcaagcag
ttctacaaagtggttcctggtcatggtttataccacaaggcatttgagatcaaggtcaac
cacttactgcagttactaactcagatgtcatttagccagtgtctggtcttctccaatcta
tccagcagagctcaaaatctctcagatatcttatgcgagaatggatggccaagtacttgt
atatcaggcaaccaagaccagacccacagactcaatgcaatgtcaatgctcaagacattt
cagtgtcgtgttctcatatcaactgatttgacagccagaggcattgatgcagagaatgtc
aacctcatcgtgaacctagacgtaccctctgatggtaagacttatcttcatcgcattggg
agggctggtcgtttcggcagtaagggtgttgcagtcacactggccagcgaggggaacgag
gaatcattgctgagaaacatccagcgacagtgccgagtcaaactacgggtcttgccagac
cctgtgccatcagacttggtgaattccattgatgtcattgtgaatgagttagatgtgaca
gccaatagtggatcatccgttacatgcgatgggaatgacacagagaatatctcagatgac
aacaagtttgaagaaaccgatgaatcacaatcagagatcaacgactatgagcattcaaag
acactggagagagcgccctcttgtgagagagcaagggaggattttggtccaatgagtcta
aatggtccggcaggcaatattggcaagaatcccgaatcaaactttgcagttaaaccacct
ctgaaatcacatgatacaactccctcgaccttcacaatgagtgggattaacaatcacagt
ataccattcaacatacgaagcccaatcaatttcaagattccctccttggctgagaaagtt
ggacggagatctcaacaagatacatggacctggcagaaagccactgcagattttgaacag
tttatgagcggatgtagagaatgctgtgatgttacatcgcatcttcaagatgacggattt
agagaacggtatcggaacgctggattagtccagactgtagttgcgttgagtgatcctgga
ggagatgttgtaataccatcgcaatcagaagaaccagggagtgacaactcggggacaaat
caaatgaagaaagattcactgttatcattcaatgcagaaacactcagccaagaaggggtt
aatccaaagagtctaaggagcattacgtcatctcataatgcaacaactgatgacaaaggt
ggcaatgagaatgatgtaggggtcacaagtaaagggacagtaaccaatgtaagatcgatt
ggcaggggttatgttaacggaggaacagctgatgtaacattggtgggtactttgaacatg
agcaatgattttgctgttcccagcaatgagcttggagatgaggtcctagctgggacttct
tctctatacaatgcagtcactgaaggagagaagatttatcactcatacaggacagcatcc
gagagtaaagatgatgtggatattgtccagcaagaagacgataaaagactgaaacctttt
ggtttatcaacggcaacatccaagactaaagatgacggagacactccgttccaggagaaa
gaagaagagatgaccaagagaatatcttctgactttagagtggctgactcaccatcgatg
gcatcatctataagcgagaatgacttcaaaatagcctatgaagaagatgacagaatcaat
gcagtttttgttcccattaaccacagccttgccaattcaagagaaaggaatgtttctgca
gagagtgcagtaagtgtagccgtgcaggagggagatagatgtgaaaagaacgatcaaatg
tcaatgaaaacagaaacatcggaaatgaaagagaaagtttgcttttcatggaggccatct
caagatttccacagtagtcttgtacctgaaaacactgatggtttttcagctgccaataat
tccgatagtagcgaatgtgatgatgctacggaagagccattggttgttgatggcataaga
acaaagatgcacagtgctcctatgcatcaaacaagtacatctttacctgaacaaaatgtt
agtaatcacatccctgaaactgtgtctgtcagaccatggcacataagacaacgcaatccg
acagaggctgtgagaagtaaaaactgcgttgataaaacagcaccatcacaaaaaacattc
agtccattgccagctgtcaaaagatcaatctgtggaaaatctcaaggttctggttgcaag
ccaacttggaccaaaccaactagggtaacttcaaatgcaccagggagaacaaggacttca
aaggatccattgcagacagactctgttgactcttctgacaagacatgtccagatgagtca
aacctgggcgctgatccaatttggcagtcctacacgcaataccttaaacctgaaagtgta
gctattgattctgatgttggttcaacggactctggttctgatgacgtaagttctgctgaa
agccaagattcacctgatgatgatttgtcaagcgagggcagtggtgataataaaccccag
cagacccggcaccctgactaccggtatgactcagctatagcccatggctggtggttacca
agtccctatgagctgcagccatctgctagttattatggggtgcctgactacacatcattt
acaactcccaaccaagtcgatcatcataaccagtatattcccccaggatttcatcaagaa
gattattataacggtgcttataatgggatgtataacacacagccacatcactacaactac
caaaactcttga
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