Acipenser ruthenus (sterlet): 117394216
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Entry
117394216 CDS
T07327
Name
(RefSeq) transcription factor Sox-17-alpha-A
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117394216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
arut03000
]
117394216
Transcription factors [BR:
arut03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117394216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
117394216
NCBI-ProteinID:
XP_033848188
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Position
4:complement(29796087..29798039)
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AA seq
393 aa
AA seq
DB search
MSSPDAGYASDDQTQGRCSMSIMMAGIGHCQWTDPLTPLGEGKIKSEACSTSSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAHQNPDLHNAELSKMLGKSWKALPVTEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLESGFLVHSVTEQQASALGNDGRVCVDNLNVNY
HEHRYPGQSQLSQLSQYRESQSMGGHFDSYSLPTPDTSPLDIVANDAVFFPSHAQEDCHM
TPYNYHHQTTEYLSQEHHSNPMLRRPLPPAEHMGQVSSLQGLMGCHGSLAMYYSQLCAPT
NPKPQQGTHSGQLSPPPESHQVDNVDHMHQSDLLGDVDRNEFEQYLNSAARSDMAGLSYN
GHEANMPLTDNSLISSVLSDASTAVYYCNYNSA
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcctgatgctgggtatgcaagtgacgatcagacccagggaaggtgttcgatg
tcaatcatgatggctggaattggacactgtcagtggacagatcccttaactcctctcggg
gaagggaaaatcaaaagtgaagcctgctctactagctccggaaaccagaacagaggcaag
actgaacctcggatacggcgacccatgaatgcctttatggtctgggcaaaagatgaacgt
aagcgcctggcacatcaaaacccagatctgcacaatgcagaactcagcaaaatgcttggt
aagtcgtggaaagcattgcctgtgactgaaaagcgcccgtttgtggaagaggcagagaga
cttagagtgcagcacatgcaggaccaccccaactacaaatacagacccaggaggagaaag
caggtgaaaagaatcaagagactggaatctggctttctggtgcacagtgtgactgaacag
caggcttcagctttagggaacgatggcagggtctgtgtagacaaccttaatgttaattat
catgagcaccgttacccaggtcagagtcagctctctcaacttagccagtaccgggaatca
caaagcatgggggggcattttgactcttacagtttacccacccctgatacatcgcccctg
gacatagtggcgaacgatgctgtatttttcccatcgcatgcccaagaagattgccacatg
acgccttacaattaccaccaccaaaccacagagtatctctcacaagaacaccattccaat
cctatgcttcgcaggcctcttccccctgcagagcacatgggtcaagtcagttctttgcag
ggtttgatgggatgtcatggctctctggcaatgtattacagtcagctgtgtgcacccacc
aaccctaaacctcaacagggaacccactctggacagctctcgcctccacccgaatcccac
caggtggacaatgtagatcacatgcaccagtcagaccttttaggagacgtggatcgcaat
gaatttgagcagtacctgaactctgccgcccgctcagatatggcagggctttcttataat
ggacacgaagcaaatatgcctctgactgacaatagtctaatttcttcagttctgtccgat
gcaagtaccgctgtatactactgtaattacaacagtgcataa
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