Acipenser ruthenus (sterlet): 117394618
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Entry
117394618 CDS
T07327
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03015
mRNA surveillance pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117394618
09123 Folding, sorting and degradation
03018 RNA degradation
117394618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117394618
03041 Spliceosome [BR:
arut03041
]
117394618
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117394618
mRNA cycle factors
Stress granule specific factors
117394618
Spliceosome [BR:
arut03041
]
Complex C
Other components
Complex C specific factors
117394618
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_RDR6
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
117394618
NCBI-ProteinID:
XP_033848857
LinkDB
All DBs
Position
4:90996522..91014209
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AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLKEIFGPALSIRVMTDDSGKSKGFGFVSFERHED
AQKAVDEMNGKEVNGKQIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD
GIDDERLRKEFTPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL
YVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQQAPPSGYFMAAIPQAQNRAAYY
PTSQLAQLRPSPRWTTQGVRPQHFQGMPNALRPSAPRAPTFSAMRPTSSQGVPRVMSTQR
VATQVMGPRPTAAAAAAAAPGVRGVPQYKYAAGVRNPQQHLNTQPQVSMQQPAVHVQGQE
PLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVDEAVAVLQAHQAKESAQKSVTNSAGVPSV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagcgctccgagttacccgatggcctccctgtatgtcggcgatctccaccca
gatgtaaccgaggccatgctgtacgagaaatttagtcccgctgggcccatcctgtcgatt
cgggtatgcagggacatgatcacccgaaggtcgcttggctatgcctacgtcaacttccag
caacccgctgatgctgagcgtgctttggacaccatgaactttgatgtcatcaagggaaag
cctgtgcgtatcatgtggtctcagcgcgacccttccttgaggaagagtggagtgggcaac
atctttatcaagaacctggacaaatccatagataacaaagctctatacgacaccttctct
gcttttggaaatatcctctcctgtaaggtggtatgtgatgaaaatggttcaaagggatat
ggatttgtgcactttgaaacccaggaagctgcagaaagagccattgaaaagatgaacggc
atgcttctcaatgaccgaaaagtatttgttgggcgtttcaaatctcgcaaggagcgtgag
gcagagcttggagctagggcgaaggagttcacaaatgtgtacatcaagaactttggagag
gacatggacgatgagaagcttaaagaaatttttggaccagccttgagtatcagagtaatg
actgatgacagtggaaagtcaaagggctttggctttgtcagctttgagagacatgaagat
gcacaaaaagccgtggatgagatgaatgggaaagaggtcaatggaaaacaaatctacgtt
ggtcgtgctcagaagaaagtagaacgccagacagagcttaagcgcaagtttgagcaaatg
aagcaggacagaatgacccgttaccagggtgtcaatctgtatgtgaaaaatcttgatgat
ggcatcgatgatgagcgtctgcgcaaggagtttacaccatttggcaccattactagtgct
aaggtcatgatggagggtggtcgtagcaagggctttggctttgtgtgtttctcctctccg
gaggaagccaccaaggctgtgactgaaatgaacggcaggattgtcgctaccaagcctctc
tacgttgctctggcgcagcgcaaggaggagcgacaggctcatttgaccaaccagtacatg
cagaggatggccagtgtcagagctgttccaaatccagtcatcaacccttaccagcaagca
cctccttctggatacttcatggcagccattccacaggctcagaacagagctgcatactac
ccaacaagccagcttgcacagctgagacctagccctcgctggactacacagggtgtgagg
ccacagcatttccagggtatgcccaatgccctccgaccttcagccccaagagcaccaacc
ttcagtgcaatgagaccaacttcctctcagggggttccacgtgtgatgtccactcagcga
gttgcaacacaggtgatgggaccacgccctaccgctgctgcggctgctgcagctgctccc
ggggtccgtggtgttccacagtacaagtacgctgctggagtccgcaatcctcaacagcat
ctcaacactcagccccaggtttccatgcagcagcctgctgtccatgtgcaaggccaggaa
cctttgactgcttccatgctagcctctgctcctccacaggagcaaaagcagatgctgggt
gagcgtctgttccctctgatccaggcaatgcatcccagtctagctggaaaaatcactgga
atgcttctggagattgacaactctgagctgctgcacatgctggagtctccagagtctctg
cgatccaaggttgatgaagctgtagctgtactgcaggcccatcaggccaaagagtcggca
cagaaatctgtaaccaattcagctggtgttccaagtgtctaa
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