Acipenser ruthenus (sterlet): 117394758
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Entry
117394758 CDS
T07327
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117394758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arut03032
]
117394758
03400 DNA repair and recombination proteins [BR:
arut03400
]
117394758
DNA replication proteins [BR:
arut03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
117394758
DNA repair and recombination proteins [BR:
arut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
117394758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
117394758
NCBI-ProteinID:
XP_033849176
LinkDB
All DBs
Position
4:complement(46378312..46410607)
Genome browser
AA seq
1514 aa
AA seq
DB search
MSKVDKDQFFVKFVQNLEQSSDLATKAYDAIRELQSEEFLQTVDEEAALLLQQKDKSLYI
SDYFSGPAFIHLKKLGCRIVGPLVVLFCLQQQRSVPKAEHPVYNMAMADVTISCTSLEKE
TREEVSKLVRLMGGCVFRDLNVSVTHLIAGEVGSKKYVVAANLGRPILLPSWVKACWEKS
QDSLFRYTDLSMDEYLCPIFHGCTICVTGLTNLDRKEVQRLVVEHGGQYTGQLKMNECTH
LIVQEPKGQKYECAQKWNVYCVSIHWLFSSIEKRFCQDESNYKVEPTTEREQCPNTSTPT
GCGKKQDVSSASLHLGVSQISNISVSCINESAGNNLEMLDRGVFNAQDDLLDGCKIYLCG
FGGKKLDKLRRLINSGGGLRFNQLSEDVTHIIMGEKDEDVKQFLSKESHRPHIVTVKWLL
ESFSKGCLLPEEKYFHLDYLSPAPSAVEPPVHMPAPQRLNTGVERKAAVAVSPGREQRKD
EDLLSQYLEKDKTVVEAGDRSCDDATRVTMLETDPSSNTMQGEAATVLEEGGLFSGKWFL
IVGFSGEDEACLAELIKEHAGKVLEACSRAIADYAVVPLLGCEVESTVGDVVTNTWLAMC
IEQQILLDLQMNPMFTPVAVVEGSTPLKDCVLSVSQFTGVERDSLVYLAELLGARVQEFF
VRKANQRKGMLASTHLVLKEPEGSKYEAAKKWNMPAVTMHWVLDSAHTGRRAEEDRFLVE
NSGSPENEESYTGGTQKQEKLRMSMRSPEIPLARLNASKNTVVTPLDMNRFQSKAFQSVI
SRPDGGKVTPGIECRALQREPSLQFDTPSRFLCRDQLFKPSFDIKDAMAALETPGGPWQQ
SRKTSTPLSEVIGRNMKVALANSTRNNMATVTASPQLATPEPQKVEEKPKPLAGIIICVS
KKLIKKQSELNATAASLGADYRWSYDETVTHFIYQGRQNDTSREYKAVKERGVHIVSQHW
LQACAEEQRLVPESLYPYTYNPKLSLNLSQVQDRRVSTSRSPPSIPYCNNLEQNCEQDKS
YVPLDREEELTEETRNHREDRNPEKTSLENLEKGDLAEAFEMRENLQRQLQEIMSATKLP
KGQWVSLAALQNSPQTPESVGHSGRNGRSWALEALRHSRRAIMDMNTEPSQYEQITWDDP
TAREERARLASNLQWPGSPSQHSPQNHQINILNAEDDIPQHKESSTDSKLAGFATCELDE
TNKNKTAKSPGPLKVETPPKDCIILKPQAPSIAFHLANPLVAPPPKGQKEKKGVKIQPVF
QLSSLNPQERIDYCHLIEELGGVVLEKQCFDPSCTHIIVGHPMRNEKYLASMAAGKWILH
RSYLEACRAAGHFIEEEDYEWGCSSILNILPGINAQQRKLAVSALRWRKFMQRQRETNNN
TEGAFSGWKVILNIDQAREAGFRRLLQSGGAKVFPGHSPSMYKDSSHLFADFSKLKAEDP
RVNVVEAAAQKVNCLKPEYIADYLMQDPPPPMENYCLPEAAQYLQNRLESSKYITSRKRE
ASGDASVVKKSRIN
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagtggataaagatcaattctttgtgaaatttgtacaaaacttggaacagagt
tcagatcttgcaacaaaggcctatgatgctattagagagttacaatcagaggagttcctg
cagactgttgatgaagaagcagcacttttgttacaacaaaaagataaatctctctacatt
tccgattattttagtggaccagcatttatccaccttaaaaagctgggctgcaggattgtc
ggccctctggtggttcttttctgcctccagcagcagcgctctgtgccaaaagccgaacac
ccggtgtacaacatggctatggcagacgtgaccatttcctgtaccagtctggagaaggaa
acaagggaagaagtgagtaagttggtgaggttaatgggaggttgtgtgttccgggatctt
aatgtttcggttactcatctgattgctggagaggttggcagcaaaaagtacgtggtggct
gccaatctggggaggcccatcctactgccctcctgggtgaaggcatgctgggagaaatcc
caggacagtttatttaggtacacagacctgagcatggatgagtacttgtgccctatattt
catggctgcacaatctgtgtaactggattgaccaacttggatagaaaagaggttcaaagg
cttgtggtagaacatggcggccagtatacagggcaactaaagatgaacgaatgcacacac
ctcattgtgcaggagcccaaaggtcagaagtatgaatgtgcacagaaatggaatgtatat
tgtgtgtccatacactggctcttcagcagcattgagaagagattctgccaggatgagtcc
aactacaaggtggagcccaccaccgagagagagcaatgtcctaatacatccacacctaca
ggctgtgggaagaagcaagacgtttcttcagcttcattacatctaggcgtgagccagatt
tccaacatcagtgtgagctgcatcaacgaatctgccggaaataacttggagatgcttgat
agaggtgttttcaatgcacaagatgacctgcttgatggctgtaaaatctacctctgtggg
tttggtggtaagaagctagataagttaagaaggcttattaacagtggtgggggtctacgc
ttcaaccagctcagtgaggatgtaacccacataatcatgggagagaaggatgaagacgta
aaacagtttttaagcaaggaatcccacagaccccacatagttacagtaaaatggttactg
gagagcttctccaaaggctgcctccttccagaggaaaaatatttccacttggactacctg
tccccagcaccctctgctgtggagccccctgtccacatgcctgccccacagaggctaaac
accggtgttgagaggaaagcagcagtggcagtcagccctggcagggaacagagaaaagat
gaggatttgctgtctcagtacttggaaaaggacaaaacagttgttgaagctggggacaga
agctgtgatgatgcaactcgtgttaccatgttggagacggacccttcaagcaacaccatg
cagggggaggctgccacagtgctagaggaggggggtctgttcagcgggaagtggttcctg
atagttggcttcagcggagaggacgaggcctgcctggcagagttgatcaaggagcatgct
gggaaagtgcttgaggcctgtagccgagccattgctgactatgcagtggtgccactgctg
ggctgtgaggtggagtccacagtgggagatgtggtgaccaacacctggttggcaatgtgt
attgaacagcagattctcttagacctgcagatgaaccccatgttcactccagtagctgtg
gtggaaggaagcacaccactgaaggactgtgttctttctgttagccagtttactggtgtg
gagagagactcactagtctacctagctgagcttcttggagccagagtacaggaattcttt
gttcggaaagccaaccagcggaaaggcatgctggctagcacccatctggtgctgaaggag
ccggaggggtccaagtatgaagcagccaagaagtggaacatgcctgcggtcaccatgcac
tgggtcctggattctgcacacacaggcaggagagctgaggaagaccgcttcctagtggaa
aattctggctcgccagaaaatgaagagagttacacaggtgggactcaaaaacaagaaaaa
ctcagaatgtccatgcgctcccctgagattcccctggctcgactgaatgcttcaaagaac
acagtggtgaccccgctggatatgaaccgatttcaaagcaaagcctttcagtcagtgatc
tcccggcctgatggaggaaaggtgacaccaggcattgagtgcagagcgctgcagagagaa
ccatccctacaatttgatacaccgtccaggtttctgtgcagagaccagctcttcaaaccg
tcctttgatatcaaggatgccatggcagctctggagacaccaggaggcccctggcagcag
agcaggaaaacaagcaccccactgtctgaggtgattggaaggaacatgaaggttgccctg
gcaaacagcactcgcaacaacatggctactgtcactgccagcccacagctagctacacct
gagcctcaaaaggtggaagagaagccaaagccccttgcaggtatcattatctgtgtgagt
aagaaactcattaagaagcagagtgagctgaacgccactgcagcctctcttggggcagac
tacaggtggtcttatgatgaaacagtcacacacttcatctatcaaggccggcagaatgac
actagtcgagagtacaaggccgtcaaagaaagaggtgttcatattgtctcacagcactgg
cttcaagcatgtgcagaggagcagaggctggtgcctgaatccctgtatccgtatacatac
aatcctaaattgagtctgaacctcagccaagtgcaggacagaagagtttctacatctagg
tctccacccagcatcccctactgtaacaatctggaacagaattgtgagcaggacaagtca
tatgttccattggatagagaagaagagttgacagaggaaaccagaaaccaccgtgaagat
agaaaccctgaaaaaacaagcctagaaaatctggagaaaggggatctggctgaagcattt
gaaatgcgagagaatctgcagcggcagctccaggagatcatgtcggccaccaagctgcca
aaaggccagtgggtttcactggctgctttgcagaattctccccagacccctgagagtgtg
ggccactcagggaggaacgggcgtagctgggccctggaggcactcaggcattcccgtcgg
gcgataatggacatgaacacagagccctctcagtacgagcagattacctgggatgacccc
actgccagagaagagagagctagactggccagtaacctgcagtggcccggcagtccgtcc
cagcactctcctcagaaccaccagatcaacatcctcaatgcagaagatgacatcccccaa
cataaagagtcatcgactgattcaaaactggctggatttgctacatgtgaacttgatgaa
acaaacaagaacaagactgcaaaatctccaggcccattaaaggttgaaactccaccaaaa
gattgcattatcctcaagccacaagctcccagcattgcctttcatctggcaaacccacta
gttgcaccaccgccaaagggacagaaggagaaaaaaggagtaaagatccagcctgtattt
cagctgtcttcgcttaaccctcaagaaagaattgactattgccacctcattgaagaactt
ggtggggtggttctggaaaaacagtgcttcgatcctagctgcacgcatatcattgtggga
caccccatgagaaacgagaagtacctggcctcaatggctgctggaaagtggatactccac
cggtcctatctggaggcatgcagagctgctgggcacttcattgaggaggaggattatgag
tggggctgcagctccatccttaacattcttcctggaataaatgcccagcagaggaaactt
gctgtttctgcattgagatggagaaagttcatgcagaggcaaagggagaccaacaataac
acagagggagcttttagtggctggaaagtaatattaaacattgatcaggcgagagaggca
ggatttagacgactgctccaatctggtggagctaaggtttttccaggtcattctccatct
atgtacaaggattccagtcatctgtttgcagatttcagcaaactaaaagctgaggatccc
agagtgaatgtggtggaggctgctgctcagaaagtgaattgccttaaaccagaatatatt
gcagattatcttatgcaggacccacctcctccaatggaaaactactgtctgccagaagct
gcacagtatctgcagaataggttggagtcaagtaaatatataacctctcgcaaacgggaa
gcttctggagatgcatcagtagtgaagaagtccaggataaactaa
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integrated database retrieval system
