KEGG   Acipenser ruthenus (sterlet): 117396895
Entry
117396895         CDS       T07327                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117396895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:arut03041]
    117396895
Spliceosome [BR:arut03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    117396895
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EML PRP4 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_Aladin NBCH_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_EIPR1 WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_Nup120_160 WD40_like Tricorn_2nd Beta-prop_WDR11_1st Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 117396895
NCBI-ProteinID: XP_033851090
LinkDB
Position
16:19890..26017
AA seq 508 aa
MSDDEGAPPMAKKSRIYYGSLEERERERLSKGAGSSLGREAVRAGIDAGNINLASGEAFD
LEDHVSERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLR
NILSVVGTDALKKSKKEDEKSKRPQDEFQQTWYHEGPETLKAARLWLARYSLPRAMERLE
EARKLKEVPEASRTARQQERHTALRGLNNFCSQIGDDRPISSCQFSPNSKLLVTASWSGL
CKLWSVPDCSLIRTLRGHNTNVGAMSFHPQATVSLDEKDVNMASCAADGSVKLWSLDSDE
PVADIEGHTARVARVSWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVHDIAFH
PDGSLAGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGLSFSPNGFHVATGSGDHTCKVW
DLRQRKCIYTIPAHQNLLSGVKFQPTDGHYLLTGAYDNTAKVWTHPGWSPLKTLAGHEGK
VMGLDISLDGQLIATCSYDRTFKLWMSE
NT seq 1527 nt   +upstreamnt  +downstreamnt
atgtctgacgatgaaggcgccccgcccatggcgaagaagtctcgtatctattacgggagc
ctggaggagcgcgagcgcgagcgactgagcaagggggctgggagctctctgggcagagag
gcggtccgcgccgggatagacgcggggaacattaacctggccagcggcgaggcgttcgat
ttggaagaccacgtcagcgagcgacaggcggaggtgctggcggagttcgagcgcaggaag
cgggcgcggcagatcaacgtgtccacggacgactccgaggtgaaggcgtgtctgcgcgct
ctcggggagccaatcacgctgttcggggaggggcctgcagaacgcagggagaggctgcgc
aatatcctgtctgtggtcgggacggacgctctgaagaagtctaagaaggaggacgagaag
tcaaagagaccgcaggacgagttccagcagacctggtaccacgagggtcccgagaccctg
aaggctgcccgcctctggctggctcgctactcgctgcccagggcgatggagagactggag
gaggccagaaaactaaaggaggttcccgaggcgtcgcgcacagcacggcagcaagagagg
cacacggccctgcggggcctgaataacttctgcagccagatcggtgacgaccggcccatc
tcttcctgccagttcagccccaactccaagctgctggtcaccgcgtcatggagtggactc
tgcaagctgtggtcagttccagattgcagcctgattcgcaccctcagaggtcacaacacc
aacgtgggcgccatgtccttccacccgcaggccaccgtctccctggacgagaaggatgtc
aacatggcttcctgcgctgcagacggctctgtgaagctctggagtctcgacagtgacgag
cccgtagcggatatcgaggggcacaccgccagggtcgcgcgggtcagctggcacccctcc
ggcaggtttctgggcacaacctgctacgatcactcgtggcgcctctgggacctggaggct
caggaggagattctgcaccaggaggggcacagcaagggggtgcacgacatcgccttccac
cccgatggctcgctggctgggactgggggtctggatgcgttcggccggctgtgggacctg
cgcacgggccgctgcatcatgttcctggagggacacctgaaggagatctacgggctcagc
ttctcccccaacgggttccacgtggccacaggaagtggagaccacacctgcaaggtgtgg
gacctgcggcagaggaagtgcatctacacgatccccgcccaccagaacctgctgtctggg
gtcaagtttcagcccactgacggtcactacttgctgaccggcgcctacgacaacactgcc
aaagtgtggacgcacccgggctggtccccgctgaagacgctggccgggcacgagggcaag
gtgatggggctggacatctctctggacgggcagctcatcgccacctgctcctacgaccgc
accttcaagctgtggatgtcagagtag

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