Acipenser ruthenus (sterlet): 117397176
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Entry
117397176 CDS
T07327
Name
(RefSeq) neural cell adhesion molecule 1-like isoform X1
KO
K06491
neural cell adhesion molecule
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
arut04514
Cell adhesion molecule (CAM) interaction
arut04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
117397176
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117397176
04517 IgSF CAM signaling
117397176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117397176
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
arut04515
]
117397176
04090 CD molecules [BR:
arut04090
]
117397176
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117397176
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
arut00537
]
117397176
04091 Lectins [BR:
arut04091
]
117397176
Membrane trafficking [BR:
arut04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
117397176
Cell adhesion molecules [BR:
arut04515
]
Immunoglobulin superfamily
NCAM1/2
117397176
CD molecules [BR:
arut04090
]
Proteins
117397176
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
117397176
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
arut00537
]
Others
117397176
Lectins [BR:
arut04091
]
I-type lectins (Siglecs)
117397176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Ig_VEGFR-1-like_5th
V-set
FN3_DSCAM-DSCAML_C
VEGFR1-3_N_Ig-like
V-set_CD47
C2-set_3
Ig_PDGFR_d4
Ig_ANOS1
Pur_ac_phosph_N
Adeno_E3_CR1
Motif
Other DBs
NCBI-GeneID:
117397176
NCBI-ProteinID:
XP_034768623
LinkDB
All DBs
Position
42:complement(5900249..6081703)
Genome browser
AA seq
1144 aa
AA seq
DB search
MLETRDLIWGLLLIGTAASLQVDIVPAQGEISVGESKFFLCTVTGEADLITWFSPSGDKI
ETGQRISVVRNDDLSSTLTVYSADIDDAGTYKCVATFDGNESQATVNMKIFQKLTFRNAP
SPQEYNEGDDAVIICDVTSSPPPNVIWKHRSREIIHKKDVRFSVLSNNYLQIRGIKKSDE
GTYRCEGRILARGEISFKDIQIIVNVPPAIRTRQTELNATSDIGQSVTLVCDADGFPEPA
VSWARVKNVLEESDKYSFTEDGSQMTILNVKKEDQGEYTCIAKNKAGETEQEFSLNVFVK
PKITYVENKTALELEEQITLTCEAIGDPTPSIVWSSASRIFTEGEQYTSNRIYQASWTRP
EKYESLDGNVVVRSDGRVSSLTLKDIQYTDAGQYVCTARSSIGQDSQSMFLEVHYAPKLQ
GSVTVYTWEGNPANITCEVFAHPGASIVWFRDGQQLPNANTTNIKIYPTPTASFLEITPD
SQSDFGNYNCTATNRIGQESKEFILIQAEVPSSPLINEVSPYSSTARVEFEEPDSSGGVP
VLKYKAEWRIMGTSEWMRKEFDARNVYTENLITITGLRPDSRYELRMSAINGKGQGESSE
STVFKTEPVHLLYTPATPVSVTSEMLYTSSVYLESTLSTTDAFTEILTTDVVTTASSAPS
STDKGEPSPPKLEGKPYESGNTLKVNWIKQDDGGSPIRHYLVRYRAKQMDDWKPEIRLPA
DSEYAILGGLEWNTEYEIYVVAENQQGKSKPSTLFFRTVPEPTSMPDEMASGSGLGTGAI
VGILIIVFIILLVVVDVTCYFLNKCGLLMCIAVNVCGKPGPGAKGKDMEEGKAAFSKDES
KEPIVEVRTEDEHTPNHDGGNLTEPNETTPLTEPEHPADTTATVEDMIPSVATNSDTITE
TFATAQNSPSSETTTLTSSITAPASTPVQQASTPKAGVTSPTSPAPASTEAASKVAPLVD
LSDAPAPNSPAAPSPNPTNAPKAPTTTKTQAPAAPPEAVSIPTPTAEPPKPKTEAVKSPE
NEAAQPNAVKSPTEAAKNPTSPKNPSAPDGNAKPSQNEDFRVDLDLAKDVFAVWGNDPPP
AVNQAAVPAPAAADSTKPSTPAKDEKVLVEEKTNPEEAEIKKPVAEVKTVPNEATQTNGN
ESKA
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaaaccagggatctcatctggggattgcttctcattggcactgcagcctctctg
caagtggacatcgttccagctcagggggagatcagcgtgggagaatccaaattctttctg
tgcacagtcacgggagaagccgacctaatcacctggttctctccgagcggggacaagatt
gagacgggccaacgcatctccgtggtgcgcaatgacgacctgtcgtccacgctgaccgtc
tacagcgcggacatcgatgacgccggcacctacaagtgtgtggccaccttcgacggcaat
gagtctcaggccaccgtcaacatgaagatctttcaaaaactgaccttcagaaacgcaccg
tccccgcaggagtataatgagggagatgatgctgtaataatctgcgatgttaccagctca
ccccctcctaatgttatctggaagcaccgatcccgagaaatcatccataaaaaggacgtt
cgtttcagcgtcctctccaacaactacctgcagatccgcgggatcaagaagtccgacgag
ggcacttacaggtgcgagggcaggatcctggctcgcggagagatcagcttcaaggacatc
cagatcattgttaacgtccccccggccatccgaaccagacagactgaactgaacgctact
tctgatatcggtcaatctgtgactctggtctgcgatgcagacggattcccagaacctgct
gtgtcttgggccagggtgaagaatgttcttgaagaatctgacaagtacagctttacggaa
gacggctcccagatgacaatcctgaatgttaagaaggaggatcagggagagtacacctgc
atagcaaagaacaaagctggggagacggagcaggagttcagcctgaacgtctttgtgaaa
ccgaaaatcacctacgtagaaaacaagactgctttggagcttgaggagcagatcacactg
acctgcgaagccattggggaccccaccccctctatcgtatggagttctgccagcagaatc
ttcacagaaggagagcagtatacctcaaacaggatttatcaggcttcgtggactcgaccc
gagaaatacgagagtctggatggtaatgtggtagtgcgcagtgatggcagagtctcctcc
ctgacgctgaaggatatccagtacactgatgctggccagtacgtctgcactgccaggagc
tccattggacaagactcacagtctatgttccttgaagtgcactatgctcccaagctgcag
ggctcagtcacagtctacacctgggagggaaaccctgccaacatcacctgtgaggtcttt
gcccaccctggggcctccattgtctggttcagggacggacagcagctgccaaacgccaac
accaccaacatcaagatttaccccacccccaccgccagcttcctcgagatcacgccagat
tctcagagcgactttggcaactacaactgcacagctacgaaccgcatcggacaggaatcc
aaggagtttatacttattcaagcagaggtcccgtcgagcccattgatcaatgaggtgagt
ccctactccagcacagccagagttgaatttgaggagcctgattccagtggtggagtgcct
gtcctcaagtacaaagcagagtggagaatcatggggaccagcgagtggatgaggaaggaa
tttgacgccagaaatgtgtatacagagaacctgatcaccatcaccggtctgagacccgat
agcagatacgagttgagaatgtctgcaatcaatggcaaggggcagggagaaagcagcgaa
tccactgtcttcaagactgagccagtccacctcctttacacacctgcaactcctgtctct
gtgacctctgaaatgttatacaccagctcagtgtatctagaatccaccctctctacaact
gatgcattcactgagatacttacaacagatgttgtgaccacagcttcctctgctccgagt
agcacagataaaggggaacccagtcctcctaaactggaagggaagccgtatgagtctgga
aacactctgaaagtgaactggatcaagcaggatgatggcggctctcccatcagacattac
ctagtccggtacagagctaaacaaatggacgactggaaaccagagatcagactgccagcc
gacagcgagtacgccattctcggaggtctggagtggaacacagagtatgagatttacgtg
gtggcggagaaccagcaaggaaaatcaaaaccaagcaccttatttttcaggaccgttcca
gaacccacctccatgccagacgaaatggcatccggttccggcctgggcacgggtgccatc
gtggggatcctcatcatcgtcttcatcatcctgttggtggtcgtggacgtcacctgctac
ttcctcaacaagtgcggccttctcatgtgcatcgctgtcaacgtctgtggcaagcctggc
ccgggagccaagggcaaggacatggaggaggggaaagctgctttctccaaagacgaatcg
aaggagcccattgtggaggtgcggaccgaggatgaacacacaccaaatcatgatggggga
aacctgaccgaacccaacgagaccaccccactgactgagccagagcaccctgccgacacc
acagctactgttgaggacatgatcccttctgtggccactaactccgacaccatcactgaa
acctttgccactgcccagaacagcccttccagtgagaccaccactctcacctccagtata
actgcccctgcctccacccccgtccagcaggctagcacacccaaagccggagtcacctct
ccaacctctcccgcacctgcttccactgaagctgcatccaaggttgccccgctggtggac
ctcagcgatgccccagctcccaacagcccagcagctcctagtccaaatcccaccaatgct
cctaaagccccaaccaccaccaagactcaagcccccgcggcccctccagaggcagtctcc
atccccactcccacggccgagcccccgaaaccaaaaactgaagccgtcaagagccccgaa
aacgaagcggcgcagcccaacgcggtgaagagcccaaccgaggcagccaagaaccccacc
agcccgaaaaacccatctgcccccgacggcaacgcgaagccctcccagaacgaagacttt
cgagtggaccttgacctcgcaaaggatgttttcgctgtctggggaaacgatcctcctcct
gctgtcaatcaggctgctgtgccggccccggccgctgcagactccactaagccatccact
ccagccaaggacgagaaggtcctagtagaggaaaaaactaacccggaggaggccgagatc
aagaagcctgtggccgaagtgaaaacagtccccaatgaagccacccaaacaaacggcaac
gagagcaaagcatga
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