Acipenser ruthenus (sterlet): 117397800
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Entry
117397800 CDS
T07327
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117397800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117397800
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117397800
mRNA degradation factors
5'-3' decay
Lsm complex
117397800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117397800
NCBI-ProteinID:
XP_033852559
LinkDB
All DBs
Position
38:complement(4060306..4076072)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFIVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQAKQEAEKLKLQALKER
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacatgccggggacagctagcctcattgaggatatcgataaaaaacacctggta
cttctccgagatggaagaacgctaattggctttttgagaagcatagatcagtttgctaat
ttagtcttgcatcagacggtggagcgaatccacgtaggcaaaaagtatggggacatccct
cgaggaatatttattgtaaggggagaaaatgttgttctacttggagaaatagaccttgag
aaggagagtgacacgcctttacagcaagtatccatcgaggagattctagaagagcagagg
gtggagcagcaggcaaaacaagaagctgagaaactgaaactccaagccttaaaggagagg
ggactttctatcccgcgggcagacacgctggatgaatactga
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