Acipenser ruthenus (sterlet): 117398134
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Entry
117398134 CDS
T07327
Symbol
acin1b
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03013
Nucleocytoplasmic transport
arut03015
mRNA surveillance pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117398134 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
117398134 (acin1b)
03015 mRNA surveillance pathway
117398134 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117398134 (acin1b)
03041 Spliceosome [BR:
arut03041
]
117398134 (acin1b)
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117398134 (acin1b)
Spliceosome [BR:
arut03041
]
Complex C
Other components
EJC/TREX
117398134 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
117398134
NCBI-ProteinID:
XP_034768870
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All DBs
Position
43:635542..728833
Genome browser
AA seq
1391 aa
AA seq
DB search
MSKEVNPVTDNKPVQVSTAAPVEKTVAETIVSVTKHRETEKNEKAEVVLIHYSSSASAEQ
AAQIDKPEEGAPEKIAKQAAGEKTLETDKPKDPKEVFAANTTDKQEQDMPAFEPKEVSKQ
SSQTSEKGAVEQPKEVPAVPENLPFNMKRQTAVPQKDTATPKQDPNKSAASEEAKAAVKV
TLKEVLQPGKTEGVHILKLDSRRVLQPEKGVGEMTKVREQPSAIQSHLPLSKRGRDLGTL
DKKQEETDTKTPATKKESSLKSAHPEKPAGGDSSKISQTPVKEVPALHKPTQETSRFSEN
LTVGSPAPEPKSVEVTAEVLSQKQNETSVIPTQTPLTPQVQSSPKKFRVFRDTSPSPEAR
APPKKTRVFRDGLPALDHPKKSFQTQGSAERSIPEPKPEKAPLVEQETEKPASLEQASET
GQLPKLSGYATSREEGPRDATWKEGELSTTAEVSPSDPKPGSESVSLKRIGPPAPVEKEG
PKPEEQNSHAGSKEPENEPPKKARGVFPETEKESGPPKRKASESSILDKDPPKPAQEAAE
TSSRQQTHKEMPEKQEDKTPVVASGKLAETAKSTTSEMPRKPEEKPRAETPKSSEGRLMK
AVKELETEPMGPILPPSPPPEETESGHPPTPPLSAPDTDRERGRRSREGASPSSSSSSSS
SSNSSSSASSSRSSSSSRSRSPSSDRRSVSPQRDSLSRDSGAFCQPEGSPDSGRPDDPPA
SRQHERRKRRAEREEEEGEHEERAGTSHSKKPCLTAEGRGNADGAEKKEWRRTGEGESRG
KHTASELKQDHASAMMESERRAEAEVSADSQSESCSEHRDERGNKGRAEEGVQPKTFTSR
KISVLSASKFLPAVSTAEPAGGSAAAAVPGGGAGGGEADGNQIGRKRRWGSSTAGTAKKP
SISITTESLKSLIPDMKPMSVVGQEAVLDLHPDEGRLSGEENERGEGREEPGQQDRALKI
CRTVTQVVPVEAQENGQKETHKEGGKEDAGCEEEERKEPQSVTMETQLPVTGETDVKKAT
PSGTLVRRSINQQKSGMSVTIDDPVRTAQHPSPPRGKTTNIVHISNLVRPFTLGQLKELL
NRTGTLVDEGFWIDKIKSHCYVTYSMTEEAVATRNALHGVKWPQSNPKFLSVEFSEQDEL
NFHKGLLADLRPAEGPRQSDISLHRSSHTVPPSSGPPQTHPSDRAVRDQWAEREREMERR
ERTRAEREWDRDKVRDYNSKHHGGSRGPHAGPEGPGGVGRRSRSRSRDRRRKERAKSKER
RTDRKEKAPEEPPAKLLDDLFCKTKAAPCIYWLPLTDKQVVLKEGERAERMKERIKRRKE
QEEEEKRRDEERRERLKEREKEVAERVRVRELEKKREQRRGGGERGGGRGGSNKGTRSRS
RGTPPPRDRRH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagaggttaatcccgtgactgataataaaccagttcaggtttctacagctgca
ccagtggagaaaacagttgctgagacaattgtgagcgtcacgaaacatagagagactgaa
aaaaatgaaaaagcagaggttgttttgatacattattcttcttcagcatctgctgaacag
gcagcacagattgataagcccgaagagggtgccccagaaaagatcgccaagcaggccgct
ggagaaaaaacactagagactgacaaacctaaagatcccaaagaggtttttgcagcaaat
acgacagacaaacaggagcaggacatgccggcattcgagcctaaagaggtttctaaacag
agtagccagacgtctgagaaaggggcagttgaacaacctaaagaagttcctgctgtgcct
gaaaacctccctttcaatatgaaacggcagacagcagtgccacagaaagacactgcaact
cctaaacaggatcctaacaaaagcgctgcttccgaagaagctaaagcagcagtaaaagtt
acacttaaagaggttttgcagccgggtaaaacagagggagtccacattctcaaactggac
agtagacgtgtcctgcagcctgaaaagggagtaggggagatgacaaaagtgcgagaacag
cccagtgctatccagagccaccttccgttgtcaaaacggggcagggatttgggcacattg
gacaaaaaacaagaggagacagacaccaaaacgcctgccactaaaaaggagagttctcta
aaatcagcacatcctgaaaagccagcagggggggacagttcaaagatttctcaaactcca
gttaaggaagtcccagcactacacaagccaacacaagagacttctagattctctgaaaac
cttactgtggggagtccagctcctgaacccaaatctgtggaggttacagcagaagtttta
tcacaaaagcaaaatgagacttcggttattcccacacagactccactgacaccacaggtt
caatcctctcccaagaaattcagagtctttcgagacacctctccgtctccagaggctagg
gcaccacccaaaaagacacgggtcttcagggatgggctgccggctctagatcaccccaag
aaaagctttcaaacccaggggtcggctgaaagaagcatccctgaaccaaaacctgagaaa
gcacctctggtggagcaggagacagagaagccggctagcctggaacaagcttcagagact
gggcagttgcctaagttgtctgggtacgctacttccagggaggaaggaccgagagatgcc
acgtggaaggaaggggagttgagcacgactgcagaagtgagcccttcagaccccaaacca
gggtcagaaagcgtgtccctcaaaagaataggccccccagcgccagtggagaaagaaggg
ccgaagccagaagagcagaattcacatgctggttccaaagagcctgaaaacgaacctccg
aaaaaagccagaggagttttccctgaaacggaaaaggagagcggccctcccaaaagaaaa
gcaagcgagagctccatcctggacaaagacccccccaaaccagcacaagaagcagcagaa
acttccagtaggcagcagacacataaagagatgcctgaaaaacaggaagataagaccccc
gtggtggcttctgggaaactggcagaaacagctaagtctacgacttcagagatgcccagg
aagccagaagaaaagcccagggcagagacgcccaaatcttcagaggggcgtctgatgaaa
gccgtgaaggagctggagacggagccaatgggccccatcctgccaccctctccgccccct
gaggaaacggagagcggccacccgccgacaccacccctttcagcccccgacacggacagg
gagagagggaggcggagcagggagggagcctctccttcctcttcctcttcatcttcttcc
tcctcaaactcctcatcttcggcctcttcctcccgttcgtcgtcgtcttccaggtcgagg
tcgccctcaagtgacaggaggtctgtgagcccccagcgtgactctctctccagagacagc
ggtgctttctgccagcctgaggggtctcccgattcaggacgccccgacgacccccccgca
tcccgacaacacgagaggcgcaagagacgagcggagagagaggaggaggaaggggagcat
gaggagagagctgggaccagtcacagcaagaagccttgcctgacagccgagggaaggggc
aatgcagatggagcagaaaaaaaggaatggagaagaactggggaaggagagagcaggggt
aaacacacagctagtgagctgaagcaagaccacgcgtctgctatgatggagtcggagaga
cgcgctgaggcagaagtctctgcagatagccagtctgagagttgttctgagcacagggat
gagagagggaacaagggccgagcagaggagggagtgcaacccaaaacctttacatccagg
aagatctcagtcttgtcagccagtaagtttcttcctgcagtttccaccgctgagccagca
gggggcagtgcagcagctgcagtcccaggtgggggagcagggggaggggaagcagacggg
aaccagataggaaggaaaaggcgctggggttccagcaccgctggtactgccaagaaacct
tccatcagcatcacaacagaatcactcaagagcttgattcctgatatgaagccaatgtct
gtggtgggccaggaggccgttctggatctgcaccctgatgaagggcgcctgtctggggag
gagaacgagaggggagaggggagagaggaacccggtcagcaggacagggcactcaaaatc
tgcaggactgtcacacaggtggtacctgtggaagcccaggagaatggacagaaggaaaca
cacaaggagggaggaaaggaggatgctggatgtgaggaagaggagaggaaggaaccccag
agcgtaaccatggagacccagctgccagtcaccggggaaactgatgtcaagaaagcaaca
cctagtggcactctagtgcggcgctccatcaaccaacagaagagtgggatgtcggtcacc
attgacgacccagtccgcaccgcacagcacccctcccccccccgcggcaaaactaccaac
atcgtgcacatctcaaacttggtcagaccgttcacactgggccagctgaaagagctactg
aacagaaccggtaccctggtggatgaaggattctggatcgacaagataaaatctcactgt
tatgtcacgtattccatgacggaagaggccgtggccacgaggaacgcgctgcatggggtc
aagtggccgcagtctaaccccaaattcctttcggtggagttttcggagcaagatgagctc
aacttccacaaaggcctgctagcagacctccggccagcagagggccccagacagtcggac
atctctctccatcgctcctcccacactgttcccccctcctccgggcccccacagactcat
ccctcagacagggccgtgagggaccagtgggcggagagggagcgggagatggagaggcgg
gaaaggaccagggccgagagagagtgggacagggacaaggtgcgggattacaacagcaag
caccatggaggctctagggggccacacgcaggacccgaggggccagggggagtcggccgc
aggtccaggtctcgatccagggacaggaggcgcaaggaaagagccaagtccaaagagagg
cggacagacaggaaagaaaaagccccggaggagcctccagctaaactcctggacgacctc
ttctgcaaaaccaaagcggcgccctgcatctactggctccctctaacagacaagcaggtg
gtgctgaaagagggggagcgtgcagagaggatgaaagagcgaatcaagcgccgcaaagag
caggaagaggaggagaagaggagggacgaggagaggagggagaggctgaaggagcgagag
aaagaggtggcagagagggtgcgagtgagggagctggaaaagaagagagaacaaaggaga
gggggaggggagcggggtggagggagagggggcagcaacaagggaacacggagccgtagc
cggggcaccccaccgcccagagaccgaaggcactga
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