Acipenser ruthenus (sterlet): 117398828
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Entry
117398828 CDS
T07327
Symbol
chd8
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117398828 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
arut03036
]
117398828 (chd8)
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117398828 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
Myb_DNA-bind_7
Paralemmin
MUN
Motif
Other DBs
NCBI-GeneID:
117398828
NCBI-ProteinID:
XP_034770350
LinkDB
All DBs
Position
49:complement(806598..867841)
Genome browser
AA seq
2549 aa
AA seq
DB search
MADPMMDLFDDPNLFNLDPLPDDTFTQSSSDPIDDALRLAFGHVATPPQHGAQASQPQQA
VQTTQPYLSLHDYSGQKKQAVLQAPSATTAVAATTSKDPTLLGASVAVPVSTSTLTTVVR
MPSAGLKTIAASSNQAHSQTVPKIVILKAPATSGAVTSQGQIHMVTTSSAGNNGGKVMLG
KVLTGTPLRPGVSIVSGGTVLTTAAAGNAKGSLVNAGVGGAGVQRVVQTSNGPVKQVLLQ
TVQTQQQQLQPGQVQGSSATLKAPGITLTSIPQGESKRITLVLQQPQQGGSVSGLAGGQR
FILGGLPGKIVLQGNQLAALTQARNSAQGGAGTGGQPKVVTIQLQVQQQPNCNTKLQLVS
PSGGQQQVLQFSQGQVQGQRLAVPLKLLLQPQAGSSQGSVSVVKVSNMSEAQSSAGDQSP
TPCPARGPETRRLEHQRKQEKANRIVAEAIARAKARGEQNIPRVLNQDELPTLAAGGAAA
AGPGGEDGAGEEGAAGKKRSSKKKSAGAASGTGEGGXGKPAAKKSKSAGSSGGAGQGSKA
KGKVKANTITPVAGKKRKRIGSSDNSDGELTPPTSPRGEEDESAKRRSNRQVKRRKYTED
LDIKITDDEEEEEDVDVTGPVKQEPITEPQAEGGDGVPTMQFFVEDPNEEDATIVDKILS
MRLTKKEICQGQYTTVEEFFVKYKNYSYLHCEWASLEQLERDKRINQKLKRFKTKVAQMR
HLFHEDEDPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELQEDVDQ
GKVEEFRKIQGRQPNLKRVPRPAASAWKKLELSREYKHGNCLREYQLEGVNWLLFNWYNK
QNCILADEMGLGKTIQSISLLQEVYSAGLHGPFLIIAPLSTIANWEREFQTWTDMTMNTI
VSTSTKCTARTTRCVCVASRQMIQQYEMYCKDDKGHLIPGAYKFEALITTFEMVLSDCPE
LREIEWRCVIIDEAHRLKNRNCKLLDSLKHLDLEHKVLLTGTPLQNTVEELFSLLNFLEP
SQFPSETEFLKDFGDLKTEEQVQKLQALLKPMMLRRLKEDVEKKLVPKQETIIEVELTNI
QKKYYRAILERNFSFLSKGPGQSNNVPNLLNTMMELRKCCNHPYLITGAEEKILSDLREV
YDPLALDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIHKRYL
YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN
DLQAQARCHRIGQSKAVKVYRLITRNSYERDMFDKASLKLGLDKAVLQSMSGKENNANGI
QQFSKKEIEDLLRKGAYAAVMDEEDEGSKFCEEDIDQILQRRATTITIESEGKGSTFAKA
SFVASENRTDISLDDPNFWQKWAKKADLDMDTINRKNTLVIDTPRVRKQTRQFSTLKDDD
PVEFSDLDSEEERPRSRRHERHHGYGRTDCFRVEKHLLVYGWGRWQDILSHGRFKRRLSE
RDVETICRTVLVYCLLHYRGDENIKGFIWDLITPSESGQAKELQNHSGLSIPVPRGRKGK
KVKAQSTFDVHKAEWIRQYNPDSLFMDDSYKKHLKHQCNKVLLRVRMLYYLKQEVIGDQA
EKVLGGADARQIGIWFPEVDQLELPARWWDAEADKSLLIGVFKHGYEKYNTMRADPSLCF
VERVGRPDEKAIETEQRGGDNFGDLGEGGDFDKYTEDPEYKPMQGMSKEQDEEGDSMMLD
EEISVVDGDEGHMAQAGAVYWPAGSALTARLRRLITAYQRSYRREQLKMEAAEKGDRRRR
RCEAAYKLKEIARRERQQRWTRREECDFYRVVSTFGVEFSPAHGHFDWRRFRSFARLDKK
TDDSLVRYYHGFLAMCRRVCKLPQPPGQVPPDPSLSIALITEERASRTLYRIDLLRKIRE
QLLPHPSLDQLLASLAQPSPELPDWWQSPQHDKELLLGAAKHGVSRTDQSILPDPEYSFH
QARLAYLQQHQLQSRSSTPLNQLQQLQQSSNPASPFQDTPSSGWGLECEKDSKGEGLAQE
VLRSGSEGSYPDSSAVFSGMSGNSTPLLLPPRSLFQKERDGKRRDDSDSDTDSDKEDCSS
STSSNNSGSSDESDTEKEVKTGREPKLFDPDEDGSVPSQDGFASEAGPERTVLEMLQDKQ
RASEWPKDRVLINRLDMLCSAVLTGRWLASRRVTPELGSPCLDEPRSSSPSPHSFTRLLP
EDPEFTVRLRHEEGLKLTIQKQSLHHNGTLAEGSHQRGGRGRGAQADDPPQDSPFSDPQA
RVPVIHSLTRSVLVGQDAPRRSELSDWLKEHPQYEVEPQALSFLAGSHRHKKHRSKKVSK
LEPGTLSGAERVQLVHLRSGRKLGGAFAPSLRGLRQCLEENPDYFVSADWAEIVRHSGYL
PDSMFDRILTQDIKKSSRRPKQTPRAHKHHGNSSRHNDSIIKLEPTALSSTGGLPLLPDS
SSSGSYQTEGNRHPHYHRNSSSAPSPALPRHILSPAYGVKMETELEGGALEVIDCSDSLS
QGYASSDKDLSLLDDPMMPNNSESSEGED
NT seq
7650 nt
NT seq
+upstream
nt +downstream
nt
atggcagacccaatgatggacctttttgacgaccctaaccttttcaaccttgacccttta
cctgatgacactttcactcagagctcttcggaccccatcgacgatgccctccggcttgcg
ttcggacacgtggccaccccgccgcagcacggagctcaggcctcgcagccccagcaagct
gtccaaaccacacaaccatatctgtccttgcacgattacagcggacagaaaaaacaggcg
gtcctgcaggcgccttctgcaaccactgcagtagcagctaccacctctaaagaccccacc
ttgctgggggcgtccgttgcggtgcctgtctccacctccacgctgaccaccgtggtaaga
atgccgtcagcaggactgaaaaccatcgcggcttcttcaaatcaggcacattcacagacg
gtcccgaaaattgtcatcctgaaggcccctgcgacctcgggggccgtcacttctcagggg
cagattcacatggtcacgaccagcagcgccggcaacaacgggggcaaagttatgctgggc
aaagtgttgacgggaacccctctgcggccgggggtgtccatagtttccggggggaccgtt
ttgaccaccgcggccgcagggaatgccaaggggagcctggtgaatgccggagtgggtggt
gccggtgtgcagagagtggtccagacctcgaatggacccgtgaagcaggtcctgctgcag
accgtgcagacccagcagcagcagctccagccaggtcaggtgcagggcagcagcgccacg
ctcaaggcacccggaatcacactcacctccatcccacagggtgaatcgaaacgcatcacc
ctggtcctgcagcagccccagcagggaggctcagtgagcgggctggccggagggcagcgc
ttcatcctagggggcctgcctgggaagatcgtgctgcaggggaaccagctggcagcactc
acccaggccaggaacagcgcgcagggaggggctggcacaggggggcagccaaaagtggtg
accatccagctgcaggtgcaacagcagcccaactgcaacaccaagctgcagctggtgtct
ccctctggtggccagcagcaggtactgcagttcagtcaggggcaggttcaggggcaaaga
ctggcagtgcctctcaagctgctgctgcagccacaggccggctcgtcccagggctcggta
tcagtagtgaaagtgtcaaacatgtctgaagctcagtccagcgccggggaccagtccccc
actccctgcccggcccggggccccgagacccgccggctagagcaccagcgcaagcaggag
aaggccaaccgcattgtggccgaggcaatcgccagggccaaggcgcgcggagagcagaac
atcccgcgggtgctgaaccaggatgagctgcccaccctggctgcagggggcgctgccgca
gctgggccggggggcgaggacggggcgggcgaggagggggctgctggcaagaagaggagc
agcaagaagaagagtgccggggccgcgtccggcaccggcgagggagganngggcaagccg
gcagccaagaaaagcaagtctgcagggagcagcggaggagcggggcaggggagcaaggcc
aaagggaaagtgaaagccaacaccatcacgcctgtcgcgggcaagaagcgcaagaggatt
ggctcctctgacaattccgacggggagctaactccgcccacttcgccgcgaggagaggaa
gacgagagcgcgaagaggcgctctaaccggcaggtgaagcgtaggaagtacacggaggac
ctggatatcaagatcacggacgacgaggaggaggaggaagatgtggacgtgacgggcccc
gtcaagcaggagccaatcacagagccgcaggcagagggaggagatggcgtgcccacaatg
cagttcttcgtggaggacccaaacgaggaggatgctaccattgtggataaaatcctgtcg
atgagactcaccaagaaagagatctgtcaaggccagtacaccaccgtggaagagttcttt
gtcaagtacaaaaactactcgtacctgcactgcgagtgggcctctcttgagcagctggaa
cgagacaaacgcatcaaccagaaactgaagcgcttcaagaccaaggtggcacagatgagg
cacctgttccatgaggacgaggaccccttcaaccccgactatgtggaggtggacagaatc
ctggatgagtctcacagtgtggacaaagacaacggcgagcctgtgatctactacctggtg
aagtggtgctccctgccctatgaggactccacctgggagctgcaggaggatgtggaccag
ggcaaagtggaggagttcaggaagatacaggggagacagcctaacctcaagagagtgcca
cgccctgccgccagtgcctggaagaagttggagctttcccgggaatacaagcatgggaat
tgtcttcgggaataccagctggaaggagtgaactggctgctcttcaactggtacaacaaa
cagaactgtatcctggctgatgagatgggtctggggaagacgatccagtccatcagcctg
ctgcaggaggtgtacagcgcggggctgcatggccccttcctcatcatcgccccgctctcc
acaatcgccaactgggagagggagttccagacctggaccgacatgaccatgaacaccata
gtctccaccagtacgaaatgtactgcaaggacgacaaggtgtgtgtgtgtggcctccagg
cagatgatacagcagtacgaaatgtactgcaaggatgacaagggtcacctgatcccggga
gcctacaagttcgaggctctgatcacgaccttcgagatggtgctgtctgactgccctgag
ctgagagagatcgagtggaggtgtgtgatcatcgacgaggcacacagactcaagaacagg
aactgcaagctgctggacagcctcaaacacctggacctggagcacaaggtcctgctgact
ggcacccccctgcagaacacagtggaggagctcttcagcctgctcaacttcctggagccc
tcgcagttcccatctgagacggagttcctcaaggacttcggggacctcaagactgaggag
caggtgcagaagctgcaggcgctgctgaagcccatgatgctgcgcaggctgaaggaggac
gtggagaagaagctggttcctaagcaggagacaatcattgaggtggagctcaccaacatc
cagaagaaatactaccgagccatcctggagaggaacttcagcttcctgagcaaggggcct
gggcagagcaacaacgtgcccaacctactgaacaccatgatggagctgcgcaagtgctgc
aaccacccctacctcatcaccggtgcggaggagaagatcctgtctgacctgcgtgaggtc
tatgaccccctggctcttgatttccacctgcaggcgatggtgcgctcggcagggaagctg
gtcctcatcgacaagctgctacccaagctgaaggccggagggcacaaggtgctcatcttc
tcccagatggtgcgctgcctggacatcctggaggactacctgatccacaagaggtacctg
tacgagcgcattgacgggcgcgtgcgagggaacctgcgccaagctgccattgaccgcttc
agcaagcccgactcggaccgcttcgtgttcctgctgtgcacccgagcgggggggctgggc
atcaatctcactgcagccgacacctgcatcatcttcgactctgactggaacccccagaac
gacctgcaggcccaggctcgctgtcaccggattggccagtccaaggcagtgaaggtgtac
cggctcatcaccaggaactcctatgagagggacatgttcgacaaggccagcctcaagctg
ggcctggacaaggctgtgctgcagagcatgagtggcaaggagaacaacgccaacgggatc
cagcagttctctaagaaggagatcgaggatctgctcaggaaaggagcctacgcagctgtc
atggatgaggaggacgagggcagcaagttctgtgaggaagacatcgaccagatccttcag
cgcagggccaccaccatcaccatagagtccgaggggaagggctccaccttcgccaaggcc
agttttgtggcgtcggagaaccggacagatatctcactagacgacccaaacttctggcag
aaatgggctaagaaggccgacctagacatggacaccatcaacaggaagaacaccctggtg
atcgacacgccgcgtgtccggaagcagacccgtcagttcagcaccctgaaggacgatgac
cccgtggagttctcagacctggacagcgaggaggagcggccgcgctcccgccggcacgag
cgccaccacggatacggcaggacggattgcttccgggtggagaagcacctgctggtgtac
ggctggggccgctggcaggacatcctgtctcacgggcggttcaagcggcggctgagcgag
cgggacgtggagacgatctgcaggactgtgctggtgtactgcctgctgcactaccgagga
gacgagaacattaagggcttcatctgggacctgatcaccccctccgagagcggtcaggcc
aaggagctgcagaaccactctggcctgtcgatcccagtcccccgcggcaggaaagggaag
aaggtgaaagcccagagcaccttcgacgttcacaaagcggagtggatccgccagtacaac
ccggactcgctgttcatggacgacagctacaagaagcacctgaagcaccagtgcaacaaa
gtgctgctccgggttcgaatgctgtactacctgaaacaggaagtgatcggggaccaggca
gagaaggtgctgggaggagccgacgccaggcagatcggtatttggttcccagaggtggat
cagttggagctgccggctcgctggtgggacgctgaggcagacaagtccctcctcatcggg
gtcttcaaacacggctacgagaagtacaacaccatgcgcgctgacccctccctgtgcttc
gtggagagagtaggccgtcctgacgagaaagccatcgagacagagcagagagggggagac
aatttcggggacctgggagagggtggtgactttgacaagtacacagaggacccagagtac
aaacccatgcagggcatgtcaaaggaacaggatgaagagggagactccatgatgctggat
gaggagatctctgtggtggacggggatgaaggtcacatggcccaggcgggtgcggtgtat
tggccggctggctctgcgctgactgcaaggctccggcgcttgatcacagcgtaccagcgc
agctaccgacgcgagcagctcaagatggaggccgcggagaaaggagaccgccgccgccgg
aggtgcgaggctgcttacaaactgaaagagatcgcacgcagggagagacagcagaggtgg
acccgacgggaggagtgtgatttctaccgcgtggtctccaccttcggagtggagttctct
ccggcgcacgggcacttcgactggcgccgcttccgctccttcgctaggctggacaagaag
acggacgacagcctggtgcgctactaccacggcttcctggccatgtgccggcgcgtctgc
aagctgccccagcccccgggacaggtgccccctgacccctccctgtccatcgccctgatc
acagaggagcgagcctcgcgcaccctgtacagaatagacctgctgcgcaagatccgtgaa
cagctactgccccacccttccctggaccagctcctcgcctctctcgcacagcccagcccc
gagctcccagactggtggcagagccctcagcacgacaaggagctcctgctgggggcggcc
aaacacggagtgagcaggaccgaccaaagcatcctccctgacccagaatacagcttccac
caggcacggctcgcatacctgcagcagcaccagctccagtccaggagctccacccctctg
aaccagcttcagcagctgcagcagagttctaaccctgcctctccattccaggacactccc
agcagtgggtggggcttggaatgcgagaaggattctaaaggggaggggctagctcaggag
gtgttgcgtagtggaagtgagggcagttatcctgacagtagtgcggtgttttccgggatg
tctgggaattcgacccccctgcttctgcccccacgttccctgttccagaaggaaagggac
gggaagaggagagacgattcagattcggatacagactcggataaggaagactgttcgtcc
tcgacatcttccaataattctgggtcgtctgatgaaagtgatacagagaaggaagtaaag
acggggagggagcccaagctctttgaccctgacgaggatggcagtgtaccctcccaggac
ggctttgccagtgaggccgggccagagcgcacggtgctggagatgctgcaggacaagcag
agagccagcgagtggcccaaggaccgtgtgctgattaaccgcttggacatgctgtgctcg
gccgtgctgactggacgctggctggccagccgcagagtgacccccgagctggggagcccc
tgcctggacgagccccgttcctcatccccctcccctcacagcttcaccagactgctcccg
gaggaccccgagttcactgtgagactgagacacgaggagggcttgaagttgaccattcag
aagcagagtctgcaccacaatggcaccctggcagaggggtcccaccagagggggggacga
gggaggggcgcacaggcagatgatccgccccaggactctcccttctcggacccgcaggcc
cgtgtcccagtgatccactccctcactcgctcggtgctggtcgggcaggacgcccctcga
cgcagcgagctctccgactggctcaaagagcacccccagtatgaggtggagccccaggcc
ctctcgttcctggcagggagtcacagacataagaagcaccgcagtaagaaggtctctaaa
ctggaacccgggaccctgagcggagcagagagggtgcagctggtccacctgcgcagcggc
agaaagctggggggtgcgttcgccccctctctccggggtctcaggcagtgtctggaggag
aatcctgactactttgtctctgcagattgggctgagatagtcaggcactcgggttacctc
ccagactccatgtttgatcgaattctcacccaagacatcaaaaagtccagcagacgcccc
aaacagactcctcgcgctcacaaacaccacggcaacagcagtcgccataacgacagcatc
atcaaactggaaccaactgctctcagctccacaggaggacttcccctgctgccagacagc
tcaagttcaggcagctaccaaaccgaaggaaacagacacccccactatcaccgtaacagc
agctccgccccttcccctgccttgccacgtcacatcctgtcgcctgcttatggtgtcaag
atggagacggagctggagggtggagccctggaggtgattgactgcagcgatagcctatcg
cagggctatgctagctctgataaagatttgtctctgctagacgatcctatgatgcctaat
aattcagaatcaagtgaaggcgaagattga
DBGET
integrated database retrieval system
