Acipenser ruthenus (sterlet): 117399782
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Entry
117399782 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117399782
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117399782
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_19
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
117399782
NCBI-ProteinID:
XP_033855160
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Position
24:complement(6746756..6761141)
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AA seq
1168 aa
AA seq
DB search
MSLFPAFAGLSSNNNLKNENSSKGLDWLSNQSFRTEDALTLHQRCTKGEEQPLQSSADPS
LSVDQPPLEEPAEEGFPKPKKKKKDKKKKKQKRKHKKKSREQSESSRSVSDSDSPRGHAS
EASRLEQETEKLRQEQIHLQGCFVWLDDLQTPTDQPFCVDKKADRANWEYKSLYRGDIAR
YRRKGNSCLGLNPKRHFITWVDSASEKKKIEKKQDRYFSKAGRLLLSTEGFPVHPGDVGP
VAKQTPVTSDFMAVSDWKEEDVRGPVAPAWVNPLGVYDASTTLWLQGKGQPEPENQQARP
AGAPGNVNTAMISKVEEFNRKLRENPEDAKTWMEFVSFQDELMTGPSPFTMNERESEKRR
XSLKVTLEKKIAILERAIESNPGSVKLKLARLELCKELWEPSTLLKEWKKLIFLHPNNTE
LWKKYLLFCQSQFSTFSVLKVNSIYGKCLTTLAAVHDGSMVSHPALPGAAEAILEIFLQQ
CHFLRQAGHSEKVISLFQAVLDFTFFKPDSVKDLPTREQVEFFEPFWDSGEPRFGERGAR
GWQAWMHQQERGGWLIPNEQDDEDEDIEDDTEVKDKTLPKWRIWLDVEASRETKNWLPWR
PDKSKGQSEEDCEDPDRQVLFDDIGPSVIRILKPELRFQLMCSFLQFLGIPSGCSYSGPD
WSITLDEWSVFDSGLATERPLTSLDLQCSGVSCIGHMATLHSVKKQIGHCKDGEEFIQNV
FHQALPLFSKEEKSLLSLYWLQYEKLKVLHYLQNKNKKKLKCQGKKSKKLAKNLLKEAEN
RNNLALWKEYAHLEWLLGNLEDSRKVFDTAITLATSQGLQNPALCSLCLLYTQLELEAVE
DAVGGAATSRAVHILTKLAECGPYSAYKGQVSPVNILKARKAYEYAFLGCLTESSLLCDS
TVATMRADVAVSLVACFALFQYLTVGIEAADRVYMQALEKTSELFLHKKTEITNLWTQPT
ELETLTLMRSVLLRYHMKVNVYPLGPLRETLTSALKRFPGNHSLWRLYVQTENKYHNASR
ARRFFDSVTRNADMITPRLFAIYAEQKRKELVDSVQRVDIGGVYSTIPESGLSNRIRVLF
EHAVQSDNGAHCPLLWRMYLHFLVSQGNRERSRGAFYKALQDCPWVKGLYMDAIEYFPDH
MQEIMDLMTEKELRVRVPLEELDILLED
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtcactttttccagcttttgcgggactgtctagtaataataacctaaagaatgaaaat
tcatcgaaagggttggactggctaagcaatcaaagcttccgcactgaggatgcgttgaca
ctgcaccagcgctgtaccaagggggaagaacagcctcttcagagttcagccgacccaagt
ttgtctgttgatcaaccgccattggaagaacctgctgaggaaggcttcccaaaacctaaa
aagaagaaaaaggacaaaaagaagaagaaacaaaagagaaaacacaagaagaaaagcaga
gagcagtcagagagcagcagatctgtttctgacagtgattcccccaggggtcatgcgagt
gaggcttcaaggcttgagcaagaaacagagaagctaaggcaggagcaaatacaccttcaa
ggttgctttgtttggctcgatgaccttcagaccccaacagatcaacctttctgtgttgat
aagaaagcagaccgtgccaactgggaatataaatcactctatagaggagacatcgctagg
tacaggaggaaaggaaactcctgcctgggcctaaacccaaaaaggcattttataacttgg
gtggattcagcatcggagaagaaaaagatagagaagaagcaggatcggtacttcagcaaa
gcaggacgcctgctgctgagcacagaggggttcccagtgcaccccggtgatgtgggccca
gttgccaagcagacgcctgtcactagtgatttcatggcagtctctgactggaaggaggag
gatgtcagaggccctgtcgccccagcctgggtcaatcccctgggggtttatgatgcctcc
accaccctctggcttcagggaaagggtcagccagagcctgagaaccagcaggccaggcca
gccggggcccctgggaatgtaaacactgcgatgatcagtaaagtggaagaattcaacagg
aagctaagagaaaacccagaggatgccaaaacatggatggagtttgtaagctttcaggat
gaactaatgacaggacccagtcccttcaccatgaatgagagggaatcagaaaagcgaaga
ncatccctcaaggtgactcttgagaagaaaatcgctattttagagagagccatcgaaagc
aatcctggcagtgtgaagctgaagttagcaaggctggagctgtgcaaggaactgtgggaa
ccctctacattgctcaaagagtggaagaagctgatctttctgcatccaaataacacagag
ctgtggaagaagtatcttctattctgtcaaagtcagtttagcaccttctcagtgttaaaa
gtcaatagtatttatggaaagtgccttaccaccttagctgcagttcatgatggctctatg
gtgtcccaccctgcactgcctggtgcagcggaagccatactagaaatatttcttcagcag
tgccacttcctgagacaggctggccactcggagaaagtgatttcactctttcaggctgtc
ctcgactttaccttctttaaaccagatagcgtgaaagatctgccaaccagagagcaggtt
gaattttttgagccgttctgggacagcggggagccccgctttggggagagaggagctcga
ggctggcaagcctggatgcaccagcaagagaggggcggctggttgataccaaacgaacaa
gatgatgaagatgaagatattgaagatgatactgaagtgaaggataagactttgccaaaa
tggcgtatttggctagatgttgaggcctcacgggagacaaagaactggttgccatggaga
cctgataaatcaaagggtcagtcagaggaagattgtgaggaccctgatagacaggttttg
tttgatgatatcggcccctctgtgattagaattttaaaaccagagctcaggtttcagctg
atgtgttcctttctgcaattcctggggattccgtctggatgcagttattctggtccggac
tggagtataacactggacgagtggtctgtgtttgatagtggactggcgacagaaaggcct
ttgacttcactggaccttcagtgctctggggtgagctgcatcgggcacatggccactctc
cacagtgtgaaaaagcagatcggtcactgtaaagacggggaggaattcatacagaatgtc
ttccatcaggcattgccactgttctctaaagaggaaaagtctcttctctccctctattgg
ctccagtatgagaaattaaaggttctccattatcttcagaacaaaaacaagaagaagctg
aaatgtcaagggaagaaaagtaagaaactggccaaaaatctcctgaaagaggctgaaaac
cggaacaacctggctctctggaaggagtatgctcatctggaatggttgctggggaacctg
gaagactctagaaaagtgtttgacactgccattacgctggccacaagtcaaggacttcag
aatcctgcactgtgcagtctgtgcttgctgtacacacagttagaattggaagcagtggag
gatgctgttggaggggctgcaacttctcgggcagttcatattttaacaaaacttgcagag
tgtggaccatactccgcctataaaggacaagtgtctcctgttaatatcctgaaagcccgg
aaagcttatgaatatgcattcctaggctgtttaacagaaagcagtctgctgtgtgactcc
acggttgccacgatgagggcagatgtagcagtcagcctggtagcctgttttgctctattt
cagtatctaacagtgggtattgaggcagctgacagagtttatatgcaggctcttgagaaa
acctctgagctttttttacataaaaagacagagattacaaacctgtggactcaacctaca
gagctggaaacacttactctgatgcgctccgtgctgctcaggtatcacatgaaggtcaat
gtctacccattaggccctcttcgagaaacacttaccagtgctttgaagcggtttcctggc
aaccacagcctttggaggctctatgtgcaaacagaaaacaagtaccataatgccagccga
gctaggaggttttttgacagtgtcacaagaaacgctgacatgattactccccggttgttt
gcaatctatgcagaacagaagagaaaagaactggtagattctgttcaaagggtggatatt
ggaggagtttattctactataccagaaagcggactgagcaaccggataagagtgttgttt
gaacatgctgtacagagcgacaatggagcacactgtcccttactatggagaatgtacttg
cactttctggtgtcccaaggaaatagagagaggagcaggggagcattttacaaagctctc
caggactgcccctgggtaaagggtctgtatatggatgcaatagaatatttccctgatcac
atgcaggagattatggatctaatgaccgagaaagaattgagagtgagagtgccattggaa
gaactggacattctccttgaagactga
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