Acipenser ruthenus (sterlet): 117400958
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Entry
117400958 CDS
T07327
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04510
Focal adhesion
arut04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117400958
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117400958
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117400958
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117400958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
117400958
NCBI-ProteinID:
XP_033857213
LinkDB
All DBs
Position
48:complement(1411756..1444468)
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AA seq
1488 aa
AA seq
DB search
MFSFVDSRTVLLLAATQLCLLAVVKCQDVEVPGSCTQDGQSYSDKDVWKPEPCRICVCDT
GTILCDEIICEDIKDCPNPEIPFGECCPICPAGETSPGEQPGRKGQKGEPGDITDVVGPR
GPGGPMGPPGEQGPRGERGDKGDKGGPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGPL
GPRGPPGPSGKPGEDGEAGKPGKSGERGSPGPQGARGFPGTPGLPGIKGHRGYPGLDGAK
GEAGAAGSKGEAGSPGENGAPGPMGPRGLPGERGRNGPSGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGDPGIPGFKGEHGPKGEHGPAGPQ
GAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGQPGVG
GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKGGPSGAAGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLVGPPGLRGLSGKDGETGAAGPPGPSGPAGERGEQGPP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGRAGPRGERGFPGERGSPGAQGLQGPR
GLPGTPGTDGPKGATGPSGALGAQGPPGLQGMPGERGASGIAGAKGDRGDVGEKGPEGAS
GKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPPGAAGTRGAPGDRGENGPPGPAGFAGPP
GADGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATGFP
GAAGRVGPPGPNGNPGPAGPAGSAGKDGPKGVRGDAGPPGRAGDAGLQGAAGPPGEKGEP
GEDGPPGPDGPSGPQGLAGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRGPP
GPVGPPGLSGPSGEPGREGNPGSDGPPGRDGSAGIKGDRGQTGPAGAPGAPGAPGSPGPV
GPTGKQGDRGESGAQGPAGPPGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQ
GLPGPPGTAGDQGAAGPAGPTGARGPPGPVGPHGKDGSNGQPGPIGPPGPRGRSGEVGPA
GPPGNAGPPGPPGPPGPGIDMSAFAGLAAPEKAPDPMRYMRADEASSSLRQHDAEVDATL
KSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCAVDAIKVFCNMES
GETCVYPNPASIPRKNWWTSKSADRKHVWFGETMNGGFHFSYGDDSLAPNTASIQMTFLR
LLSTEASQNLTYHCKNSIAYMDQSAGNLKKAVLLQGSNDVEIRAEGNSRFTYNVLEDGCT
KHTDRWGKTVIEYKSQKTSRLPIVDIAPLDIGGSDQEFGVDIGPVCYL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgcttcttgcagcgactcagctctgtcta
ttagcagttgtcaaatgtcaggacgtggaagtccctggcagctgcacgcaggacgggcag
agctatagcgataaggatgtgtggaagcccgagccgtgtcgaatctgtgtgtgtgacacc
gggaccatcctctgcgacgagatcatctgcgaggacattaaagactgccctaaccccgaa
atacctttcggagaatgctgccccatctgccccgccggcgagacctcccccggtgagcaa
cctggtcgcaagggacagaagggtgaaccaggagatataaccgatgttgtaggaccaaga
ggaccgggaggcccaatgggacctccaggagaacaaggaccaagaggcgagagaggagac
aaaggtgacaaaggcggtcccggccctcgtggcagagatggtgaacccggcacccctggg
aaccccggaccccctggaccacccggacccaacggtccccctggccttggcggaaacttt
gctgctcagatggcaggaggttttgatgagaaagctggtggtgctcaaatgggcgtgatg
caaggaccaatgggccccatgggtccccgagggccacccggccccactggcgctcctggc
ccacaaggtttccaaggcaaccccggagagcctggtgaacccggagctgctggccccctt
ggtccccgtggcccccctggaccttctggcaaacctggtgaagatggtgaagctggcaag
cctggcaaatctggagagcgtggctcacctggcccccagggtgcacgtggtttcccagga
acccctggactccccgggatcaaaggtcacagaggttacccaggtctagacggggcgaag
ggagaggctggagctgcaggctcaaagggtgaagctggttctcctggtgagaatggagct
cccggtcccatgggtccacgcggtctccccggcgagagagggcgtaatggaccttctggt
gctgctggtgctcgtggtaacgacggtctgcctggtcccgctggtcctcccggccccgtg
ggtcccgctggtgcccctggcttccccggatctccaggttctaagggtgaagctggtccc
acaggtgcacgtggtcccgagggagctcagggcccaagaggcgagtctggtacccccggc
tctccgggcccctccggcgcttctggtaaccccggtactgatgggatccccggagctaaa
ggttcagctggtgctcctggtattgctggtgctcccggcttccctggaccacgtggaccc
ccaggacctcaaggtgcaactgggcctctcgggccaaaaggtcaacagggtgaccccggt
attccaggattcaagggtgaacacggtcccaaaggcgagcacggccctgctggtcctcaa
ggtgcccccggcccggctggagaggaaggaaagagaggcgcccgaggagagcctggcgct
gccggcccactcggaccccccggagagagaggtgctcccggtaaccgtggtttcccaggt
caagatggtcttgcaggtcccaagggtgcccctggcgagcgtggtcagcccggtgttggt
ggtcccaaaggtgccaacggtgatcccggccgccccggagagcctggcctgcccggtgcc
agaggtcttactggtcgccctggtgatgctggtcctcaaggcaaaggtggtccatctggt
gccgctggtgaggatggtagaccaggacctcccggcccccagggtgcccgcggtcagcct
ggtgttatgggattccccggacctaaaggagccaacggtgagcccggaaaggctggcgag
aagggattggttggccctccaggtctaagaggtctgtctggtaaagatggtgagaccgga
gctgcaggacccccaggcccgtctggcccagctggcgagagaggagagcaaggtccccca
ggtccttccggattccagggtctgcccggacctcccggccccccaggtgaaggtggcaaa
ccaggtgaccagggtgttcccggagaagctggtgctgcaggcagagctggtcccagaggc
gagcgtggtttccctggcgagcgtggatctccaggtgctcagggtcttcagggaccccga
ggtctgccaggaactcccggaactgacggtcccaagggtgcgaccggcccatctggtgca
ctaggagcccagggaccccccggcctgcagggaatgcccggtgagagaggcgcttctggg
attgccggcgccaagggtgacagaggtgacgttggtgagaagggacccgagggagcttcc
ggtaaagatggttcacgaggtctgaccggtccaattggtccccccggcccagctggtcct
aatggcgagaagggtgaatctggtccctctggtcctcccggagctgctggaacccgcggt
gctcctggtgaccgtggtgagaatggtccccctggccctgctggatttgctggtccccct
ggtgctgatggtcagcctggtgctaaaggagagcaaggagaaggtggacagaagggagat
gcaggtgcccccggcccacagggtccttctggagctcctggcccacagggcccaactggc
gtgtccggacctaaaggtgcccgtggtgcccagggacctcctggtgcaactggtttccct
ggtgctgctggcagagttggtcctcccggccccaacggtaaccccggacccgctggtcct
gctggatctgctggtaaagatggccccaagggcgtgcgtggcgacgcgggtccccccggt
cgtgctggagatgctggtctgcagggtgccgctggaccccctggagagaagggcgagcct
ggcgaggatggtccccctggtcccgatggcccctccggtcctcagggtctggctggcaat
cgtggtattgttggtcttcccggacagcgtggtgagagaggcttccccggacttcccggc
ccatctggtgaacctggcaaacaaggagctcctggtggtgctggagaccggggaccccct
ggacctgtcggacccccaggtctgtctggaccttccggagaacctggcagagagggcaac
cctggatcggatggtcctccaggtagagatggttccgctggcatcaagggtgaccgtggt
cagacaggcccagctggtgctcccggtgcccctggcgccccaggatcccccggacccgtt
ggcccaactggcaaacaaggagacagaggagagtctggtgcacaaggacctgctggacct
cctggccccgctggcgctagaggaatggctggaccccaaggaccccgtggagacaagggt
gaggctggagagactggagagagaggacagaagggtcaccgtggcttcactggcctgcag
ggtcttcccggacctccaggtactgctggagaccaaggtgctgctggtcctgctggccca
actggtgcaagaggcccacccggccccgtcggtccccatggtaaggacggttctaacggc
cagccaggtcctattggcccacctggtcctcgtggtcgttctggagaagttggcccagct
ggtccccctggtaacgccggaccccctggcccccctggtcctcccggccccggaatcgac
atgtctgccttcgccgggctcgccgctcccgagaaagccccggatcccatgaggtacatg
cgggccgacgaggcctccagctccctgaggcagcacgacgccgaggtcgacgccaccctc
aaatccctcaacaaccagatcgaaaacatccgcagccccgagggctccaagaagaaccca
gcccgtacctgcagagacctgaaactgtgccaccctgactggaagagcggagactactgg
atcgatcccaaccagggctgcgcggtcgatgccatcaaggtgttctgcaacatggagagc
ggggagacctgcgtgtaccccaacccagccagcatcccccgcaagaactggtggaccagc
aagagcgcggaccgcaaacacgtctggttcggagagaccatgaatggaggattccatttc
agctatggtgatgacagcctggcccccaacactgccagcatccagatgacgttcctgaga
ctgctgtccacagaggcttcccagaacctcacctaccactgcaagaacagcatcgcctac
atggaccagagcgccggcaacctgaagaaggccgtcctgctgcagggctccaacgatgtg
gagatcagagccgaggggaacagccgcttcacctacaacgtgctggaggacggctgcacg
aaacacactgaccgatggggcaagacggtaatcgagtacaaatcccagaagacgtcccgc
ctgcccattgtggacattgcacctctagatatcggagggtcagaccaggaatttggcgtc
gacattggcccagtctgctacttgtaa
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