Acipenser ruthenus (sterlet): 117401959
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Entry
117401959 CDS
T07327
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117401959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117401959
03041 Spliceosome [BR:
arut03041
]
117401959
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117401959
Spliceosome [BR:
arut03041
]
Complex B
Other components
Prp19-related factors
117401959
Complex C
117401959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_15
TPR_8
TPR_16
ARM_TT21
TPR_1
RPN7
ARM_TT21_C
PPR
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
117401959
NCBI-ProteinID:
XP_034766200
LinkDB
All DBs
Position
34:6558446..6582856
Genome browser
AA seq
851 aa
AA seq
DB search
MPSLPEKGNVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQSAPRNTLNMIFERALKECV
CSYKLWYNYLRQRRKQAKGRCITDPAFEEVNNCHERALVFMHKMPRIWLDFCQFLMDQCK
ITRARRTFDRALRALPVTQHHRVWPLYLKFVRAHPLPETAVRVYRRHLKLCPENAEGYIE
YLRSVDRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHEMCDLISQNPDKVKSLRVGAIIR
GGLTRFTDQLGKLWCSLADYYTRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQNQDEDIDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIINTYTEAVQTVDPAKATGKPHSIWVAFSKFYEEHGQLDDARTIFERATKVN
FKQVDGLSSVWCEYGEMELRHENYEQALRILRKATAIPAKKAEYFDTSEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYERIIDLRIATPQVIINYAMFLEEHTYFEDSFKAYERGI
SLFKWPNVHDIWNTYLTKFIERYGGKKLERARDLFEQALDGCPPKYAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVEPAEQHEMFNIYIKRAAEIYGVMHTRGIYQRAIEVLPDEHSR
EMCLRFADMEAKLGEIDRARAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSIQATYNTQVNFMSSQMLKASSNATGTVSDLAPGQGSMDDMKLLEQKAHLLAAEAER
EKVKPKEKILFVRSDTSRSELAELAKQANPDEIDIDDDDEDGEGDEDNGPEEVQLEQKSV
PAAVFGGLRDD
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgttaccggagaaagggaatgtcatgtttgaggaagatgacctcccgtacgag
gaggagatcatccggaacccctactctgtcaagtgctggatgcgatacatcgaattcaag
cagagcgctcccagaaacaccctcaacatgatcttcgagagggcgctcaaggagtgtgtc
tgcagttacaagctgtggtacaactacctgaggcagaggaggaagcaggcgaaggggagg
tgcatcacagacccggccttcgaggaggtgaacaactgccatgagcgagcgctggtcttc
atgcacaagatgccgcggatctggctggatttctgccagttcctgatggatcagtgtaag
atcacgcgggcgcggcgcaccttcgaccgagctctgcgcgccctgcccgtcacgcagcac
caccgcgtctggccgctctacctgaagttcgtccgcgcgcaccccctgcccgagaccgcc
gtcagggtttaccgccggcacctcaagctgtgccctgagaatgcagaggggtacattgag
tacctgcgctctgtggaccggctggatgaggctgcagtccggctcgctgccatcgtcaat
gacgagtcctttgtctccaaagagggcaagtccaactatcagctttggcacgagatgtgt
gacctgatctctcagaacccagataaggtgaagtctctgagagtgggggccatcatcagg
ggggggctgacccgcttcactgaccagctgggcaagctctggtgctccctggctgactac
tacacccgcagcggccactttgagaaggcccgtgatgtgtatgaggaggctatacaaact
gtggtgactgtgcgggacttcacccaggtctttgacagctacgctcagtttgaggagagc
atgatcgctgccaagatggagaccacttctgagttgggtcagaaccaggacgaggacatt
gacctggagctccgactcgcccgattcgagcagctgatcaaccggcgccccctgctgctc
aacagcgtgctactgcgccagaatccacacaacgtccacgagtggcacaagagggtgaag
ctgtacgaggggaagccacgagagatcatcaacacctacacggaggctgtgcagacggtg
gaccctgcgaaggcgaccgggaagccccactccatctgggtagccttctccaagttctac
gaggagcacgggcagctggatgacgctcgcaccatctttgagagagccaccaaggtgaac
ttcaagcaggtggacggcctgtccagcgtgtggtgtgagtacggagagatggagctgcgg
cacgagaactacgagcaggctctgaggatcctgaggaaagccactgcgatcccagctaag
aaagctgaatatttcgatacctcggagcccgtgcagaaccgtgtgtacaaatccctcaag
gtgtggtccatgctagcggacctggaggagagcctgggcacattcaagtcgacgaaggcg
gtgtacgagcggattattgacctccgcatcgccaccccgcaggtcatcatcaactatgcc
atgttcctggaggagcacacctacttcgaggacagcttcaaggcctatgaaagaggcatc
tctctgtttaagtggcccaacgtacacgacatttggaacacctacctaaccaagtttata
gaacgctacgggggcaagaaactggagcgagcccgggacctgtttgagcaagccctcgac
ggctgcccgcccaaatacgcaaagacaatctaccttctgtatgctaagctagaggaggag
tttgggctggcgcgccacgccatggcggtgtacgagcgcgccacgcaggccgtggagcca
gcggagcagcacgagatgttcaacatctacatcaagagagcagctgagatctacggagtg
atgcacaccagaggcatctaccagagagccatcgaggtcctcccggacgagcactctcga
gagatgtgcctgcgcttcgctgacatggaggccaagctgggggagatcgaccgagcccgg
gccatctactcctactgctcccagatctgtgaccccaggatgacggcaacgttctggcag
acgtggaaggagtttgagatccgccacgggaatgaggacacgatccgtgagatgctgagg
atcaagcgcagtatccaggccacctacaacacccaggtcaacttcatgtcatcacagatg
ctcaaagcatcctccaacgccaccggcacagtgtcggacctggctccaggacagggttcg
atggatgacatgaagcttctggagcagaaggcgcacctcctggctgctgaggcagagagg
gagaaagtcaaacccaaggagaagatcctgttcgtcaggagtgacacgtctcgcagtgag
ctggctgaactggccaagcaggcgaatccagacgagatcgacattgacgatgatgacgag
gacggagagggagatgaagacaatggacctgaggaggtgcagctggagcagaagagcgtt
cctgcagccgtgttcggggggctccgggatgactga
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