Acipenser ruthenus (sterlet): 117402197
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Entry
117402197 CDS
T07327
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117402197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117402197
03019 Messenger RNA biogenesis [BR:
arut03019
]
117402197
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117402197
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117402197
U7-dependent histone pre-mRNA processing factors
117402197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
117402197
NCBI-ProteinID:
XP_033858997
LinkDB
All DBs
Position
5:complement(79059152..79069790)
Genome browser
AA seq
691 aa
AA seq
DB search
MAAKRKADSLVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGITFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVHAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEIATMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEAHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KSEQGQRVSGILVKRNFNYHIVTPSDLSNYTELSMSTVKQTQAIPFTGPFTLLESQLCNI
AGNIEEIETHDRPALKVFKNITLVQEPGMVVLEWISNPLNDMYADAVTTVVLEVQSNPKA
QKAMANAKQDRIDMETYQKRLEVMLQDMFGEEAVNLKDGKDLLVTVDGKTAYINVETRTV
DYEEGSADDESLKEMVELAVQRLYDALNPAL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaaagaaaagcagacagtttggttcccgcggaggaaagcgaccagctcctg
atcagacctcttggtgctggacaggaggtgggaaggtcatgtatcatcctggagttcaag
ggaagaaaaatcatgctggactgtggtatccaccctggtttggaggggatggatgctctc
ccttacattgatttgattgaccctgcagagattgaccttctccttataagccatttccat
ttagatcactgtggggccttgccttggtttctacagaagaccagcttcaaagggaggacg
ttcatgactcacgcaactaaagcgatttatcgatggctcctgtcagattatgtaaaagtc
agtaacatttcagcagatgacatgctgtacacagagaccgacctggaagaaagcatggac
aagattgaaaccatcaacttccacgaagtgaaggaggtagcagggatcacattttggtgc
taccatgctggccacgttctgggggcagccatgttcatgattgaaatagctggcgtgaag
ttgttgtacacaggagacttctctcggcaagaagacaggcatttgatggcagccgagatt
cccagtgtcaaaccggatattctcattattgaatccacctacggcacccacatccacgag
aaaagggaagaacgagaggcacgcttctgcaacactgtgcacgacattgtgaacagggag
gggaggtgcctcattcctgtctttgccttggggagagcccaggagctgctgcttattctc
gatgaatactggcagaatcacccggagctacacgacattcccatctactatgcctcgtcc
ctggctaagaagtgcatggcggtgtatcagacttacgtccatgccatgaacgacaagatc
cgcaaggctatcaatatcaacaacccctttgttttcaagcacatcagcaacctgaaaagc
atggatcattttgatgacatcggccccagcgtggtcatggcctccccaggtatgatgcag
agtggcctttccagggagctgtttgagagctggtgcactgataagaggaatggcgtcata
attgcaggttactgcgtggaaggaacccttgccaagcacatcatgtctgaaccagaggag
atcgccactatgtccggacagaagctgcagctgaagatgtctgtggattacatctccttc
tctgctcacacagactaccagcagaccagcgagttcatccgggcactgaaaccgccacac
gtaatcctggtgcacggtgaacaaaatgaaatggccaggctgaaggctgcactgatccgt
gaatatgaagacaatgatgaagctcatattgaagtacacaacccacgcaacactgaggct
gtgacgcttaacttcagaggagagaaacttgccaaggttatgggatccctggcggacaaa
aagagtgaacaaggtcagagagtttcaggaatacttgtgaagcggaacttcaactaccac
atagtcactccatcagatctgtccaattatacagaactatcaatgagcacagttaaacag
acccaggccattccttttacaggcccattcacattgctggagagtcagctatgcaatata
gcagggaatattgaagaaattgagactcacgacaggcctgcactaaaggttttcaaaaac
atcacactggtgcaggaacctggaatggtggtattggagtggatttccaatccattgaat
gacatgtacgctgacgcagtgaccactgtcgttctggaggtgcagtccaatcccaaggct
cagaaagccatggcaaatgccaaacaggacagaattgatatggaaacctaccagaagaga
ctggaagttatgttacaggacatgtttggtgaagaggctgtaaatttaaaagatggcaaa
gatctgttagtcactgtggatgggaagactgcatatatcaatgtggagacacgaacggtg
gattacgaggagggcagtgccgacgatgagtccctgaaggaaatggtggagctggctgtg
cagagactttacgatgcccttaaccctgccctctga
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