Acipenser ruthenus (sterlet): 117402246
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Entry
117402246 CDS
T07327
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117402246 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arut03400
]
117402246 (msh2)
DNA repair and recombination proteins [BR:
arut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117402246 (msh2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
T3SS_needle_reg
Motif
Other DBs
NCBI-GeneID:
117402246
NCBI-ProteinID:
XP_033859100
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Position
5:2534607..2586891
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AA seq
932 aa
AA seq
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MAVQPKQSLSTDSVAENGFLSFYFSMPEKPDTTVRLFDRSDYFTVHGKDAQFAAKEVFKT
NGVIKTIGSGSRRLESVCLSKANFESFVRDLLLVRQYRVEVYKNKAGSKASREHDWQLAY
KASPGNLTQFEEILFGTSDSSTAAGVVGVKLSMVDGQRQVGVGYVDSTLRRLGVCEFTDN
DQFSNLEALLVQIGPKECVLPSGETAGDMGRLRQVVQRGGILITDRKKAEFSTKDIVQDL
NRLLRAKKGEQVSSAALPEMEKQVAMSSVSAVIKFLELLSDESNFGSFELTTFDLSQYMR
LDNAAVQALNLFQASPDDTTGSQSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN
LVESFIEDSELRQNFQEDLLRRFPDLNRLAKKFQRQSCTLQDCYRLYQAVGQLPNLVLAL
ERYDGNHQMLLNAVFISPLNDLVSDFIKYQEMIETTLDMDQVEHHEFLVKPSFDPNLSEL
REKMDSLEKSMQSALSSAARELGLEAGKTVKLESSAQLGYYFRVTCKEEKSLRNNKKFTT
LDIQKNGVRFTNSKLSSSNEEYMKSREEYEEAQNTIVKEIISIAAGYVEPIQTLNDVVAQ
LDAVVSFAHVSNGAPVPFVRPVMLEKGQGRLVLTASRHPCIEVQDDVAFIPNDVTFQKDK
QMFHIITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCESAEISIVDCILARVGAGDSQLKG
VSTFMAEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCLFA
THFHELTALAEEVATVNNLHVTALTTDSTLTMLYRVKQGVCDQSFGIHVAELASFPKHVI
ENAKEKAMELEEFQTVSKSEECDEGPATKKRCREKEEGEQIIEEFLSKVKALPISEMSGE
AIKRELKNMKAAVLTKNNSFVNEIISRSKTTA
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacagagcctgtccacggatagcgttgcagaaaatggctttctc
agcttttatttctccatgcctgaaaaacccgacaccactgtcaggctgtttgatcgcagt
gattattttactgtgcacgggaaagatgcacagtttgctgcaaaggaggtattcaagact
aacggggttattaagaccattggttcagggagccggagactggagagcgtgtgtctcagt
aaagcgaactttgagtccttcgttcgggatctcctccttgtccggcagtacagggtggaa
gtttacaagaacaaggccggaagcaaggcgtccagagagcatgactggcagctggcatac
aaggcctctccagggaaccttacccagtttgaggagatcctgtttggcaccagtgactcc
tccacggcggcaggtgtggtgggggtgaagctgagcatggtcgacgggcagcggcaggtc
ggggtgggctacgtggactccacgctgaggcggctgggtgtgtgcgagttcacagacaac
gaccagttctccaacctggaagccctgctggtgcagatcggacccaaggagtgtgtgctg
ccgagcggggagactgccggggacatgggcagactcagacaggtagtgcagcgagggggc
attctcatcacggaccggaagaaggcagagttcagcaccaaggacattgtgcaggacctg
aaccgactgctgagagccaagaagggggagcaggtctccagtgctgccctgcctgaaatg
gagaagcaggtcgccatgtcgtctgtgtctgctgtgatcaagttcctggaactgctgtcg
gacgagtccaacttcgggtcgttcgagctgacgacctttgacctgagtcagtacatgagg
ctggacaatgccgcagtccaagcgctcaacctgttccaggcctccccggatgacaccact
ggatcccagtctctggcgggtttgttaaacaaatgtaaaacccctcaggggcagcgactg
gtgaaccagtggatcaaacagcctctcatggacaagaaccgcattgaggagaggctgaac
ctggtggagtccttcatagaggactctgagctgcggcagaacttccaggaggaccttctg
cgccgcttccctgacctcaaccggctggccaagaagttccagcggcagagctgcaccctg
caggactgttaccggctctaccaggccgtggggcagctccccaatctggtgctggcgctc
gagagatacgacggaaaccaccagatgctgttgaacgctgtgtttatctcccctctgaac
gatctggtcagcgatttcatcaagtatcaggagatgattgaaactaccctggacatggat
caggtggagcaccatgagttcctcgtgaagccgtcgttcgacccgaatctgagcgaactg
cgggagaaaatggacagcctggagaagagcatgcagtctgccttgagcagcgcggccaga
gagctcggtctggaggcaggcaagactgtaaagctggagtcaagcgcccagctggggtat
tacttcagagtgacttgcaaagaggagaaaagcctgcgcaacaacaagaagttcaccacc
ttggacatccagaagaacggagtgaggttcaccaacagcaagttgagctccagcaatgaa
gagtatatgaagagcagagaggagtacgaggaggcccagaacaccatcgtgaaagagatc
attagcattgcagcaggttatgtcgagccgatccagaccctgaatgatgtggtggctcag
ctggacgcggtggtcagctttgctcacgtgtcgaatggagctcccgtcccgtttgtccgg
ccggtcatgctggagaagggtcaggggcgcctcgtgctgactgcctccaggcacccctgc
attgaggtccaggacgacgtggccttcatccccaatgacgtgaccttccagaaggacaag
cagatgttccacataataactggccctaacatgggaggtaagtcgacgtacatccgccag
gcaggcgtgatcgtgctcatggctcagatcggctgctttgtgccctgcgagtcagcggag
atcagcattgtggactgcatactggctcgggtcggagcgggggacagccagctgaagggc
gtctccaccttcatggcggaaatgctggagacggcagccatactgcggtcggccacggag
aattctctgatcattatcgacgagctgggaagaggcacatccacgtatgatggatttggc
ttggcatgggccatctcagagtacattgccaccaagatcggggctttctgcctcttcgcc
acgcacttccacgagttgacggccctggcggaggaggtggcgactgtgaacaatctgcat
gtgaccgcgctgacgactgacagcactcttaccatgctgtaccgcgtcaagcaaggagtc
tgtgatcagagtttcgggattcacgtggcggagctggccagctttccgaagcacgtcatc
gagaacgccaaggagaaggccatggagctggaggagttccagacagtctcgaaatctgaa
gagtgcgatgaggggcccgccaccaagaagcgctgtcgagagaaagaggaaggtgaacag
atcattgaggagttcctttccaaagtcaaggcgctgccgatttcagagatgtcaggagag
gccatcaaacgagaactgaagaacatgaaggcagcggttttaacgaagaacaacagcttt
gtgaacgaaatcatctcccgatccaaaaccactgcataa
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