Acipenser ruthenus (sterlet): 117402898
Help
Entry
117402898 CDS
T07327
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03008
Ribosome biogenesis in eukaryotes
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117402898
09123 Folding, sorting and degradation
03018 RNA degradation
117402898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117402898
03019 Messenger RNA biogenesis [BR:
arut03019
]
117402898
03009 Ribosome biogenesis [BR:
arut03009
]
117402898
03016 Transfer RNA biogenesis [BR:
arut03016
]
117402898
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117402898
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
117402898
Ribosome biogenesis [BR:
arut03009
]
Eukaryotic type
Pre-60S particles
RNases
117402898
Transfer RNA biogenesis [BR:
arut03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
117402898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
117402898
NCBI-ProteinID:
XP_033860399
LinkDB
All DBs
Position
5:86185710..86230949
Genome browser
AA seq
956 aa
AA seq
DB search
MGVPAFFRWLSRKYASIIVHCLEEKAKECNGVRVPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYIDRLYNIVRPRKVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKSRIREEVLQRGGYLPPDEVKERFDSNCITPGTEFMENLAKCLRYYVAE
RQNNDPGWKNITVILSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCGLCGQVGHEIKDCQGIAREKQGEHDQFADSLPCSEQE
FIFIRIAVLREYLERELTMASLPFPFDIERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTESGFVNLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KKKRMKADKPAFLPSGQFAPQALGRRGGPQPVDNPRHAAFNMRMHGRDQQNMNAASSLKA
MMKNGQQTPSGSRDASDGGPSPSGGVKRKAQDSDSEPEPEDNIRLWEEGWKQRYYKNKFD
VDASDEKFRRKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTEFE
LGTKPFKPLEQLMSVFPAASGNFLPVSWQKLMTDPNSSIIDFYPDDFAIDLNGKKYAWQG
VALLPFVDERRLRAALEEVYPDLSPDEIKRNSLGSDILFIGKHHPLCDFIRELYRVNSTE
CVDIPPELCHGIKGALDLDENAILPDKIVKSPVPMLKDITHNSVISIKFKDPQFQEGFVF
KAVLLPGAKLPPKVLKPGDWERSGRGSWRPQLGFNPHRQQVHLDQSAFRALGHNMSRDRQ
RDGVYSSAPPPGAYNQGRGGHLPPSLPYSRQQQGSLLGPSPGYNQQYPRSYGNVSSSGWN
QMQSHGSAYQQGQQRGPGGGNYHQRYEERRDHRGRQGDNSGRKYPLPPTSGRYTWN
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagcgttttttcgctggctgagtcggaagtacgcatctattattgtgcat
tgcttggaggagaaggcaaaagaatgtaacggagttcgtgtacctgtggataccagtaaa
cctaatccaaatgaagttgaatttgacaatttgtacctggacatgaatggtataattcac
ccgtgtacacacccagaagacaaagctgcccccaagaatgaggatgaaatgatggtggcg
atttttgagtacattgaccgcttgtataacattgttcgcccacgaaaggtcctttacatg
gctatagatggagttgctcctcgtgccaaaatgaaccagcagagatccaggcgatttcga
gcttctaaagaaggtgtggagctgacagaagaaaagtcacgcataagagaggaggtcttg
caaagaggtgggtatttgccccctgatgaagtaaaagaaagatttgacagcaactgtatt
acaccggggactgagtttatggaaaatcttgcaaagtgtttgcggtattatgttgctgaa
agacaaaacaatgatcctggatggaaaaacataacggtaatcttgtctgatgccagtgta
cctggtgagggagaacacaagatcatggattacattagaagacaacgagctcaaccgaac
catgaccccaatactcatcactgtttatgtggagctgatgctgatttgattatgctgggg
ttggctactcatgagcccaatttcacgatcatacgggaggagttcaagccaaacaagccg
agaccatgtggcctttgtggccaggttggtcatgaaattaaagattgtcagggcattgca
agggagaagcaaggagagcatgatcagtttgctgacagtcttccatgttcagaacaggag
ttcattttcatccgaattgctgttttacgagagtatttggagagagagttgaccatggcc
agtttgcctttcccttttgacattgaaaggagtgttgatgactgggtgttcatgtgcttc
tttgtcggaaatgacttcttgcctcatttgccttccttagaaattagggagggtgcaatt
gatcgtctggttggcatttataaagatgtggtgcacaaaactgggggctatctgacagaa
agtggttttgttaacttggaacgtgtggagctgataatgcaagctgtgggagttgcagag
gataacatttttaaaaaacggaaagaggatgatgaaggcttcaaaaggagaatgaaagaa
aaaaagaaacgtatgaaagcagacaaaccagcatttttgccttcaggacagtttgcacca
caggcactaggtaggagaggtggtccacagcctgttgataacccaagacacgcagcattt
aatatgagaatgcacggacgagatcagcagaatatgaatgctgcctcttctttgaaagcc
atgatgaagaatggacagcagactccctcaggatcccgggacgcctccgatggcggtccc
tctccttcggggggtgtgaagaggaaggcgcaggacagtgacagtgaacctgaaccggag
gataacatcagattgtgggaggaaggttggaagcagcgttactataaaaacaagttcgat
gtggatgcatcggacgagaaattccgtcgcaaagtggtgaagtcctatgttgaaggtctt
tgctgggtccttagatattactaccagggatgtgcttcatggaagtggtattttcctttc
cattatgctccttttgcttctgactttaaagatattaagggcatgtttacagaatttgag
ctgggcacaaaaccgtttaaacctttggaacagttaatgagtgtatttccagcagccagc
gggaacttcttgcctgtttcatggcagaagcttatgactgatcctaactcctcgattatt
gacttctaccccgatgactttgctattgacttgaatggaaagaaatatgcctggcaaggt
gttgctctgttgccgttcgttgatgagcgtcgcctgagggctgctttggaagaggtctac
cctgacctctctcctgatgaaattaaaaggaacagtctcggaagcgatattttgtttatt
ggaaaacatcatccactgtgtgacttcatcagggagctgtacagagttaatagcacagag
tgtgtagacatacctcctgaactgtgtcatggcatcaagggtgctcttgatttggatgaa
aatgcaattctaccagataagatagtcaagtctcctgtcccaatgttgaaggatattact
cataacagtgtaataagcataaaattcaaggacccgcaattccaagaggggtttgttttc
aaagcagttcttcttccgggagcaaaactgcctccaaaagtgctgaaacctggtgactgg
gagaggtccggcaggggttcctggaggccccagcttggcttcaatccacacaggcagcag
gtccacttggatcaatcagcgtttagggcattgggccacaatatgtccagggacagacaa
agagatggtgtctacagcagtgctccacctcctggagcttataaccaaggaagggggggc
catctaccaccctctctgccatattcaagacagcagcagggctctttgcttggcccttct
cctggatataatcagcaatatcccagaagttatggtaatgtgtcttcatcgggttggaac
cagatgcaatcacatggttctgcataccagcaaggccaacagagaggtccaggaggtggc
aattaccatcaacgctatgaagagcgaagggatcacagggggagacagggagacaactct
gggaggaagtatcctctgccacctacttcaggaagatacacttggaattaa
DBGET
integrated database retrieval system
