Acipenser ruthenus (sterlet): 117402926
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Entry
117402926 CDS
T07327
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117402926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117402926
03036 Chromosome and associated proteins [BR:
arut03036
]
117402926
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117402926
Coactivators
SAGA/TFTC/STAGA complex
117402926
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117402926
STAGA complex
117402926
TFTC complex
117402926
SAGA complex
117402926
SLIK complex
117402926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
RMC1_N
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
Beta-prop_IP5PC_F
Ge1_WD40
PROPPIN
eIF2A
WD_LRWD1
DUF2379
Motif
Other DBs
NCBI-GeneID:
117402926
NCBI-ProteinID:
XP_033860490
LinkDB
All DBs
Position
5:complement(29722854..29741771)
Genome browser
AA seq
597 aa
AA seq
DB search
MQVMKRVRTEQFQYTVAQYLKRRQYVDSEGPLKGPKLSQTVEEMAANLTVQTESGCTNFV
SAAPCQADSQQYEIQFGQLRTFLTDTDVQWSWEVTSVLYPLFVYLHLDMVHCGLKSSVDS
FYSRFHNMFLQDTDQKDIIEQLRTTLTVQDISSNPKLRAFLDNKYVVHLTDEAYNYLLRY
LQSDNNTALCRVLASHIQVEVTSTQRTVYQLYGSGPSGVGVFSRGDASNNMEPGDVPATI
LQNEAARNLLQECIKRVKDGPPSLSTVCFYAFHNTDQLLNSAEISANSKLLAAGFDNSCV
KLWSLRARKLKAEPHQVDVSRINLACDVLEDESEDEDSAGTEMKTLRGHCGPVYSTTFLT
DSSGLLSCSEDTTIRYWNLGSFTNTALYQGHAYPVWDIDISPCSLYFASGSHDRTARLWT
FSRTYPLRLYVGHLADVDCVKFHPNSNYIATGSTDKTVRLWSTQQGNSVRLFTGHRGPVL
SLAFSPNGKYLASAGEDQRLKLWDLASGALFKDLRGHTSNITSLSFSPDSSLIASASMDN
SVRVWDIRNTYCNAPADGSSSELVGVYTGQTSNVLSVQFMACNLLLVTGTAQENQEH
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtcatgaagcgagtacgtacagagcagttccagtacacggttgctcagtacctc
aagcgtcggcagtatgtagactcagaaggtcctctgaaggggccgaagttgtctcagact
gtagaggagatggcagctaacctcacagttcaaacagagtcaggttgtaccaattttgtg
tctgctgccccttgtcaggcagactcacagcagtatgaaatacagtttggacaattgcga
acttttctgactgatacagatgtgcagtggagctgggaagtgacctcagtgctgtacccc
ctatttgtctacctccaccttgacatggtacactgtggcctaaaaagctcagtggacagc
ttttatagccgcttccacaacatgttcctgcaggacactgaccagaaggacattatagaa
cagttacggactaccctgacagtccaggatatctcatctaatccaaaactcagagccttc
cttgacaataagtatgtcgtccacctcactgatgaggcctacaactacctcctccgctac
ctccagagtgacaataacactgctctctgtagggtgctggcttcccacatccaagtggag
gttacttccacccagcggactgtctatcaattgtatggtagcggccccagtggcgtgggg
gtgttttcacgaggggatgccagcaataacatggaacctggggatgttcctgctaccatc
ctgcagaacgaagccgcccgcaacttgttgcaagagtgtatcaaacgtgtgaaggacggg
ccaccgtcgctcagcacggtctgcttctacgcatttcacaacacagaccaactgctcaat
tccgctgagatctccgccaacagcaagctgttggctgccggcttcgacaactcctgcgtc
aaattgtggagcctgcgggcccggaagctcaaggcagagccccaccaggtggacgtctca
agaatcaatttggcgtgcgacgtccttgaggatgagagtgaagatgaagacagtgctggt
actgaaatgaaaaccctaagaggacactgtgggccggtgtacagtactacattccttaca
gacagctcgggactcctctcctgttctgaggacacaacaatcagatactggaaccttggc
agttttactaacactgctttgtaccagggacatgcgtacccggtgtgggacattgacatt
agcccgtgcagcctttattttgccagtgggtcgcatgacaggactgctaggctttggacg
tttagtcggacatacccattgaggctctatgtgggtcacttggcagacgtagactgtgtc
aagttccatcccaactctaattatatcgccacaggctccactgacaaaactgtccggctg
tggagtacacagcaagggaattccgtaaggctgttcactggccatcgtggccctgtttta
tcactggccttttcacccaatgggaagtacctggcatcagcaggggaagaccagaggcta
aaactgtgggacttggcatcgggtgcattatttaaagacttgagggggcataccagcaac
atcacaagcctctccttcagtcccgacagtagcttgatagcctctgcctccatggacaat
tctgtcagggtttgggatatccgaaacacgtactgcaatgcacctgcggacggctcctcc
agtgagctagttggcgtttacacaggacagactagtaatgtattgagcgtgcagtttatg
gcctgcaacttactactagtgactggaacagcacaggaaaaccaagaacattag
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integrated database retrieval system
