Acipenser ruthenus (sterlet): 117403298
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Entry
117403298 CDS
T07327
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04120
Ubiquitin mediated proteolysis
arut04137
Mitophagy - animal
arut04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117403298 (prkn)
04120 Ubiquitin mediated proteolysis
117403298 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117403298 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117403298 (prkn)
04121 Ubiquitin system [BR:
arut04121
]
117403298 (prkn)
03029 Mitochondrial biogenesis [BR:
arut03029
]
117403298 (prkn)
Enzymes [BR:
arut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
117403298 (prkn)
Membrane trafficking [BR:
arut04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
117403298 (prkn)
Aggrephagy
Other aggrephagy associated proteins
117403298 (prkn)
Xenophagy
Other xenophagy associated proteins
117403298 (prkn)
Ubiquitin system [BR:
arut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
117403298 (prkn)
Mitochondrial biogenesis [BR:
arut03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
117403298 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
TBK1_ULD
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
117403298
NCBI-ProteinID:
XP_033861240
LinkDB
All DBs
Position
5:complement(4866844..5096720)
Genome browser
AA seq
466 aa
AA seq
DB search
MIVFVRFNSSYGFPVDVDVGATILHLKEAVARQQGVPAHQLRVIFAGKELRNDSTLQSCE
LPHQSTVHVVVRSPRQNRRAAGETGARSSRQGLQRGLLREVGSLTRVELSSSVLPTHSAG
LAAILEDELSSEPAQPDQADSRHRSSFYVFCKTVCKAVQPGKLRVRCKRCKQGTLTLSRG
PTCWKDVLIPNKIAGVCQSQDCDGNVADFFFKCGAHPTPDNDTSVALDLITPNYRNIPCI
ACTDVMSPVLVFQCLDRHVICLDCFHLYCVTRLNDRQFVHDPQIGYSLPCAVGCPDSLLK
ELHHFRILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEDGQRRLECEQRRGLG
CGFVFCRECKEEYHEGDCSATHRWERGVDMQGYVTDEEAARHARWEQASRDTILETTKPC
PKCHVPVERSGGCMHMVCPRAHCRFEWCWLCSVEWNRECMGDHWFG
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgatagtctttgtcagattcaactccagctatggcttcccagtagacgtggacgtgggt
gccaccatactccacctcaaggaggcagttgctaggcaacaaggggttccggctcaccag
ctgcgggtgatattcgcagggaaggagctcaggaatgactccacgctgcagagttgtgag
ctgccccatcagagcacggttcatgtcgtagtgcgctcgccacggcaaaacaggagggcg
gccggagagacgggagccaggagcagcaggcagggcttgcagagagggctgctgagagaa
gtgggcagtctgactcgggtagagctcagctcatccgttctgcccactcattcagcagga
ctggctgccatactggaggatgaactcagcagtgagccagcgcaacctgaccaagcagat
tcaagacaccgcagcagcttttatgtattctgtaagactgtttgcaaagcagtgcaacct
gggaaactgagggtacgatgcaagaggtgcaaacaagggacactgacactgagtaggggc
cctacttgttggaaggatgtgcttattccaaataagatagctggtgtttgccagtctcag
gactgtgacgggaatgtggcggattttttctttaagtgtggagcccaccccacacctgac
aacgatacttcagtggcactggatctcattactcccaactacagaaacatcccctgcata
gcttgcactgatgtaatgagcccagtgttagtgttccagtgcctggaccgccatgtcatc
tgcctggactgtttccacctgtactgcgtgacaaggctgaatgaccggcagtttgttcat
gaccctcagattggatattccttgccatgtgcagtcggctgtccagactctctgcttaaa
gagcttcatcatttccgaatcctcggagaggagcagtacaatcgctaccagcgctacggg
gctgaagagtgtgtgcttcagatgggaggagtcctgtgccctacgcctggctgtggagct
ggactgctccctgaagatggacagaggagattagagtgtgaacaaagacgtgggcttgga
tgtgggtttgtgttctgccgtgaatgcaaggaggagtatcatgaaggggactgcagcgcc
acccataggtgggagagaggtgttgacatgcaggggtatgttactgatgaggaagccgcc
aggcatgccaggtgggagcaggcttcacgagacactattttggaaaccaccaagccctgc
cccaagtgccacgtcccagtggagagaagcggtggatgcatgcacatggtctgcccgcga
gctcactgcagatttgagtggtgctggctctgcagtgtcgaatggaaccgggaatgcatg
ggggatcactggtttggctga
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