Acipenser ruthenus (sterlet): 117403422
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Entry
117403422 CDS
T07327
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117403422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arut03400
]
117403422
DNA repair and recombination proteins [BR:
arut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117403422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
117403422
NCBI-ProteinID:
XP_033861442
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All DBs
Position
5:2714380..2740368
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AA seq
1373 aa
AA seq
DB search
MAKQSSIFNFFAKSPPLKAKLEPSPSPTEVDLPSSVHKSNTSPKEEVKRAAGSSKKASAK
LRKQASAQTGVSKLFRETKKTTEATVSKSTCQFKPGDLVWAKLEGHPWWPCLVYNHPETA
ELLRGKGKAQRIHVQYFDVPPMRGWVSMKYVKPYQGSDASSAKVGGVFFSGRPEIRRAVD
LADSAMKDDTEKRLQLAVCTEPSEDDEDEEEDEMEIDEESTPSDEEHSEEEEVKSNKRPA
RQSRAGGQQAKRRRIVVPSDSENSDEEFNPDEAEVSSDEASSGVDENEVSDSESESEADP
ESPVKPINRKQEATRTLAREKTAKPSSLSETPKRSPAVSADTKLRLSAFFAPESFESQPK
SAEGSAAAGGRGTVWDHEKLDWLQDGRRRDSKRRKQTDPDYDPTTLYVSEDFLNKCTPGM
RRWWQLKSEMFDAVLFYKVGKFYELYHMDAVIGVTEMALVFMKGSWAHSGFPEIGFGRYS
DVLVQKGYKVARVEQLETPDMMEARCKTMACPTKFDRVVRREVCRVITKGTQTYSVLDGA
SSESHSKYLLCVKEKADEESSGCHRTYGVGFVDTSVGKFHVGQFQDDRHCSRFRTLVAHY
APAQLLFEKGNLSGETRKILKASLASVIQEGLQSESQFWDASKTLKVLAEEGYFKESNKK
NGDAQDALPAVLKRMTSDSDSLGFTPGEGYELALSALGACVFYLKKCLVDQELLSMSNFE
EYVPVDMEMGKAKGSSSFFARTRQRMVLDGVTLSNLEILQNGSTGTAEGTLLERLDSCCT
PFGKRLLKQWLCAPLCNPSSIDDRLHAAEDLMALPDKLSETRELLKKLPDLERLLSKIHS
LGSTLKSQDHPDSRAILYEEVTYSKRKIADFLSALEGFKIMLEVTSIIQPAVENFRSKLL
KQIVSLRDESNEGLFPDLSAELKRWETAFDHQKARSTGVITPKAGFDPEFDQALSEIEGT
QRSLQEYLEKQRKRLGSKSIVYWGIGKNRYQMEIPESVTERHVPKEYEVKSTRKGYKRYW
TREIERLFGELVTSEEKRDGALKDCMRRLFYNFDNNYKDWQTAVECIAVLDVLICLANYS
QGGDGPMCRPEVVLPVDGAVPFLELRGSRHPCITKTFFGDDFIPNDVFIGCSGEESESQA
SCVLVTGPNMGGKSTLMRQCGLMVILAQLGCYVPAESFRLTPVDRVFTRLGASDRIMAGE
STFFVELSETASILHHGTSHSLVLLDELGRGTATYDGTAIASAVVKELAENIQCRTLFST
HYHSLVEDYSHCTAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFNAARLAN
IPEEVIQTGHKKAKEFERITVSLRVFKELCSYAEDLKADASTFTALVKTITEL
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagcagtattttcaacttctttgctaaatcgccccctttgaaagccaaa
ctggaacccagcccatctcccaccgaggtggacctgccttcttcagtgcacaagtccaac
acttctcccaaggaagaagtgaagcgggcagctggctcttcaaagaaagcctcggcaaaa
ctgcgcaaacaggcatccgcccaaacaggggtcagcaagctcttcagagagacgaaaaaa
acgacagaagcaacagtaagtaaaagcacatgccagttcaaacctggagacctggtgtgg
gccaagctggaggggcacccgtggtggccctgcctagtgtacaatcaccccgagactgcg
gagctcctgagaggcaaggggaaagcccagagaatccatgtgcagtacttcgatgtgcct
cccatgaggggctgggtcagcatgaaatatgtcaagccataccaaggctcagacgcaagc
agtgcgaaagtgggtggtgtgttcttcagcgggaggcctgagattcgcagagcagtggac
ttggcagacagtgccatgaaagacgacacagagaagaggcttcagctggccgtgtgtacg
gagccttctgaagatgatgaagatgaagaggaggatgagatggagattgatgaggaatca
acaccgagtgacgaggaacacagtgaggaggaggaggtcaaatctaacaaacggccagcc
aggcagagcagagccggcggtcagcaagcgaagcggagacgcatcgtggtgccgtcagac
agcgagaactcggatgaggagttcaatccggacgaggcggaggtgagcagtgatgaggca
agcagcggcgtagatgagaacgaggtcagcgattctgaatcggagtccgaggcagaccca
gagagcccggtgaaacccatcaaccggaagcaggaggccaccagaacactggctagagag
aaaacagcaaaacccagcagcctctcagagacgccaaaaaggtcgcccgcagtgtccgcc
gacaccaagttgaggttgtctgctttctttgccccagagagttttgagagccagccgaaa
tctgctgagggttcagcagcagcaggaggcagagggacggtttgggatcacgaaaagctg
gattggctccaggacggcaggaggagggactccaaaagacgaaagcagacagacccggac
tacgacccgactactctctatgtctcagaggacttccttaacaaatgcactccgggcatg
aggagatggtggcagctcaagtctgagatgttcgatgccgtccttttctacaaagtgggc
aagttctatgagctgtatcacatggatgctgttataggggtcaccgagatggcgctggtg
ttcatgaagggctcctgggctcattctggcttcccagagattggttttgggcgctactct
gacgttctggtccaaaaaggatacaaagtggcgagggtggagcaattggagactcccgat
atgatggaagcccgctgcaagaccatggcgtgcccaaccaagtttgacagagtggtgcgg
cgggaggtgtgcagggtgatcaccaaaggcacccagacctacagtgtcctagatggagct
tcatccgagagccatagcaagtacctcctgtgtgtcaaagagaaagctgacgaggagtct
tctggatgccatcgtacgtacggcgttggttttgtggacacttcggtgggcaagttccat
gtgggtcagtttcaagatgaccgccactgttccaggttcaggaccctggttgcgcactac
gctccagcccagctgcttttcgagaagggcaatctctcgggggaaacccgaaaaatacta
aaagcttctctggcttctgttatacaagagggcttacaatctgaatcccagttctgggat
gcatccaaaacactaaaagtcctagcagaagagggctacttcaaagaaagtaacaagaaa
aatggagatgcccaagatgcactgcctgctgtgctgaaaagaatgacctcggacagtgat
tccctgggcttcacccctggagaaggctatgaactagccttgtcggcacttggagcttgt
gtgttttacctcaagaagtgtcttgtagatcaggagctgctgtcaatgtccaacttcgaa
gagtacgtgcccgttgacatggagatgggcaaagccaagggctcgtcgagcttctttgcc
aggacccggcagcgcatggtgctggacggcgtgacgctgagcaacctggagatcctgcag
aatgggtcgacgggcaccgctgagggcaccctgctggagaggctggacagctgctgcacg
cccttcggcaagcggctcctgaagcagtggctgtgtgcgccgctctgcaacccctcctcc
attgatgatcgcctccatgccgcagaggacctgatggccctcccagacaagttaagtgag
accagggagctcctgaagaagctgccagacctggagaggctcctcagcaagatccacagc
ctgggctccactctgaagagccaggaccaccccgacagcagggccatcctctatgaagag
gtcacctacagcaagaggaagatcgcagacttcctctctgcgctcgagggcttcaaaatc
atgctggaggtcaccagcatcatccagccggctgtggagaacttcagatcgaagctgctg
aagcagatagtcagcctcagagacgaaagcaacgagggtcttttcccagacttatcagcg
gagctcaagagatgggagacggcctttgaccaccagaaggcacgaagcaccggtgtcata
acccccaaagcaggcttcgatccggagtttgatcaagctctgtctgaaatcgagggtaca
caacgcagcttacaagaatatttggagaagcagcgcaagcgattgggctccaagtccatt
gtttactggggaattggcaagaaccgttaccagatggagatcccagagagtgtgacggag
aggcatgtgccaaaggagtatgaggtcaagtccactagaaagggctacaagcgttactgg
actagagagattgagaggctgtttggtgaactggtgacctctgaggagaaaagggatggg
gctctgaaggactgcatgagaaggctcttttacaactttgacaataactacaaggactgg
caaactgctgtggaatgcatcgcagtgctagacgtgctcatctgtctggcaaactacagc
cagggaggggatggacccatgtgccgcccggaggtggtgctgccagtggatggtgctgtg
cctttcctggagctgcgaggctcgcgccacccctgcatcaccaagaccttctttggggat
gacttcatccccaacgacgtgttcatcggatgcagtggagaggagagtgaaagccaggcc
tcctgcgtgcttgtgacaggacctaacatgggtggcaagtctacccttatgagacagtgt
gggctcatggtgatactggctcagctgggctgctatgttcctgcggagagtttccggctc
actcctgtggatcgagtcttcactcggctgggagcatcggacagaattatggcaggtgaa
agtactttcttcgtggagttgagcgagacggcaagcattctgcatcatggtacatcccat
tccctggtgctgctggatgaactgggaaggggcacagctacttatgatggcactgccatt
gcaagtgctgtggttaaggagctcgctgagaatatccagtgccgcactctgttttccaca
cattaccactccctggtggaggactattcacactgcacagcagtacggctcgggcatatg
gcatgcatggttgaaaacgagtgtgaagatcccagccaggagactatcacattcctgtac
aagttcatcacaggggcctgtcctaaaagctatggtttcaatgcggccaggcttgcaaac
attcctgaagaagtcattcagaccggtcacaaaaaggcaaaagaatttgagagaatcact
gtctcattaagggtctttaaggaactctgttcatatgctgaagacctaaaagcagatgcc
agcaccttcactgcactggtgaagaccataactgaactttaa
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