Acipenser ruthenus (sterlet): 117403778
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Entry
117403778 CDS
T07327
Name
(RefSeq) DNA mismatch repair protein Msh3-like
KO
K08736
DNA mismatch repair protein MSH3
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117403778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arut03400
]
117403778
DNA repair and recombination proteins [BR:
arut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117403778
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Spectrin_Dys-1
SfsA
Motif
Other DBs
NCBI-GeneID:
117403778
NCBI-ProteinID:
XP_034784104
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Position
2:3094145..3172897
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AA seq
1110 aa
AA seq
DB search
MPKANKSSSAGKQAAISKFFKPVNNNKVTSSAVSSTGNGMNSKPASLLLSQSGDKKPGSG
RKKKHSSENEPSNKRTKLSQAQDDEDCISVQNKEVKDEPMEFSRARISLSTLGRLKGFSS
SGSSSSVKEGLSGRERGSVSQSDSSLSESLNSSITAEGSFEEMGTESKTKKQRGPSFDLN
QFATGKGRVSRESGADSSTPNRRTKSIYTPLELQFLEIKEKHKDVLLCVECGYKYRFFGE
DAEIASRELNIYCHLDHNFMTASIPTHRLFVHVRRLVSKGHKVGVVKQTETTALKAVGGN
KSSLFTRELTALYTKSTLVGEDVNPLLKLGDLEEAEDVVVEDAPNNYLLCICETWGSSKD
RKRQELTIGMVAVQPSTGDVVFDCFQDSSSRSELEGRILRVQPVELLLPSELSEETERLV
RSIVSTSMQGDEQIRVERMESSHFGYSNAFKIVSDFYTFTAPEDAGSQRLSSIIGLERPV
VCCLAGVITYLTGFNLEKVLLNTSAFRQLSNEAECMVLSATTMKNLEILQNQTNCREKGS
LLWVLNHTQTPFGRRLMRKWVTQPLISAREIQTRQDAVAEILSSESSVLAPTRSLLSKLP
DLERGICSIYHKKCSTQEFLLIASVLSRLEVELRSLVPAAQSQVQSALLRNLLLETPQLL
APVHRYLRVLNEKAAKTGDKTELFADLTDFPVIRERKEEIQDVLSQIQEHRREIRLILKN
PSLDYVTVSGQQFLIEVKNTMMSKVPPDWVKISSTKAVGRFHTPFIVEKSRLLGQLREQL
TLDCCSEWISFLHQFGEHYHTIRKAVCHLATVDCIFSLAEVAKQSNYCRPVVLEDERQII
IKNGRHPAIDVLMGEQDQYVPNSTELLGDGKRVMIITGPNMGGKSSYIRQVAVITVMAQI
GSFVPADEAVVGIVDGIFTRMGASDNIYKGRSTFMEELTETSEIIQKATSRSLVILDELG
RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPLLCELERQCPEHVGNYHMAFLLNQHE
SDHNKGPGSELQPEFITFLYQLTQGAAGRSYGLNVAKLAEIPEEILRKAARKSKELEGLV
NAKRRYKKSFCDAWNISHSNALKDWVHFNT
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagcaaacaaaagcagcagtgctggcaaacaggctgctatcagtaaattcttt
aagccggttaataataataaagttacaagcagtgcagtttcttcaaccggcaatggaatg
aactcaaaaccagcctcgttattattatcacagtccggggacaagaaaccgggatcaggg
agaaaaaagaaacactcttcagaaaacgaacctagcaataaacggacaaagttatcacaa
gctcaggatgatgaagactgtatttctgtgcagaataaagaggttaaagacgagcccatg
gagttctcccgagcccgcatctccttgtccacgctgggcaggctgaagggcttcagcagc
agcggcagcagcagcagtgtgaaggagggtctgtctggcagggagagagggtctgtgagc
cagagcgacagcagcttgagcgagtcgctgaacagcagcatcacagcagagggctccttt
gaagaaatgggaactgagtccaaaactaaaaagcagcgcgggccgagcttcgatctgaac
cagtttgccactggaaagggcagggtgtccagggagagcggtgcagacagcagcacaccc
aaccgaagaaccaagagcatctacaccccgctggagctgcagttcctggagatcaaggag
aagcacaaggacgtcctgctgtgtgtcgagtgcggatacaagtacaggttctttggggaa
gatgctgagattgcgtcacgtgaactgaacatttactgccacctcgaccacaacttcatg
acggcaagcatccccactcacaggctgtttgtgcacgtccgccgcttggtttccaaggga
cacaaggtaggagtggtcaagcagactgagacgacagcgctgaaagctgtaggaggaaac
aagagctccctcttcaccagggagctgactgccctctacaccaagtccacgctggtgggg
gaagatgtgaacccgctgctgaagctgggtgacttggaggaagctgaggatgtggttgtg
gaggacgcccccaataactacctgctgtgcatctgcgagacctgggggagcagcaaggac
aggaagagacaggagctcaccatcggcatggtggcggtgcagcccagcactggggacgtg
gtgttcgactgcttccaggactcaagttcacgctcggagctggagggccgtatcctacga
gtgcagcctgtggagctcctgctcccttcggagctctctgaagagactgagaggctggtc
cgcagcatcgtctccacgagcatgcaaggtgatgagcagatccgtgtcgagaggatggag
agctcacactttgggtacagcaacgcgttcaagatcgtctctgacttctacacattcacc
gcccccgaggacgcaggctctcagaggctctccagtataataggtcttgagaggccggtg
gtgtgctgcctggcgggggttattacgtatctgaccggcttcaatctggagaaggttctc
ctcaataccagcgcattcagacagctctccaatgaagctgagtgtatggtgctcagtgct
acgaccatgaagaacctggagatcttgcagaatcaaacaaactgtagggaaaaaggcagc
ttgctgtgggtcctcaaccatacccagaccccctttggccggagattgatgaggaagtgg
gtgacacagcccctgatatcggcaagggaaatccaaactcgtcaggatgcagtggctgaa
atcctctcctcggaatccagcgtcctggctcccacccggagcctgctcagcaagctgcct
gatttggagagaggcatctgtagcatttatcataaaaagtgctccacgcaggagttcctc
ctgattgccagcgttctgtcccgtctggaggtggagctgcggtctctggtcccagctgcc
cagtcccaggtgcagtcggccctgctgagaaatctcctgctggagaccccacagctgctg
gccccagtgcatcgctacctcagggtgctcaatgaaaaggcagccaagactggagataaa
accgagctgtttgcggatctgacagatttccctgtaatccgagagaggaaggaggagatc
caggatgttctatcccagatccaggaacaccggcgagagatccggctcatcctgaaaaat
ccctccctggattatgtgactgtgtcaggccagcagtttctgatcgaggtcaagaacacc
atgatgtcaaaagtaccacctgactgggtcaaaattagcagcacaaaggcagtgggccgt
ttccacacgccttttatagtggagaagagccggctcctcggccaactgcgtgaacagctc
accctcgactgctgcagcgagtggatcagcttcctccaccagtttggtgagcactaccac
acaatcaggaaagcagtttgtcacctagcaacagttgactgcatcttctcattggcggaa
gttgctaagcaaagcaattattgcagaccggtggtgctggaagatgagaggcagataata
ataaagaatggccggcaccctgctattgatgtactgatgggagaacaggaccagtatgta
cccaacagcactgaactcctcggggacggtaagcgggtgatgatcattactggacccaac
atgggtgggaagagctcctatataagacaagtggctgtcatcaccgtgatggctcagata
ggctccttcgtgccggctgacgaggctgtcgttgggattgtggatggcatcttcaccaga
atgggagcctccgacaatatttacaagggcaggagcacatttatggaggagctgacggag
acgtcggagatcattcagaaagctacgtctcggtcgctcgtcattctagacgagctgggc
cgcgggacgagcactcacgatggcattgccatagcctacgccactctggagtatttcatc
agagacgtgaaatccttgaccctgtttgtgacccactaccctttgctgtgtgagctggag
agacagtgtccagagcatgtggggaactaccacatggccttcctactgaaccagcatgag
agtgaccacaacaaaggtcccgggagtgaactgcagcctgagttcatcactttcctctac
cagctgacacagggagcggccggcaggagctacggcctcaatgtggctaaactggccgag
atccccgaagaaatcctcaggaaagctgctcgcaaatcaaaagagctggagggcttagta
aacgcaaagaggagatacaagaaatcattctgtgacgcctggaatatatctcacagcaat
gcattaaaggactgggtacattttaatacatag
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integrated database retrieval system
